Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   KIP81_RS02645 Genome accession   NZ_CP075172
Coordinates   503947..505245 (+) Length   432 a.a.
NCBI ID   WP_243603112.1    Uniprot ID   -
Organism   Streptococcus equinus strain SheepZ001     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 498947..510245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIP81_RS02620 (KIP81_02630) - 499641..500285 (+) 645 WP_024344653.1 response regulator transcription factor -
  KIP81_RS02625 (KIP81_02635) - 500409..501809 (+) 1401 WP_243603110.1 Cof-type HAD-IIB family hydrolase -
  KIP81_RS02630 (KIP81_02640) - 501809..502165 (+) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -
  KIP81_RS02635 (KIP81_02645) cysK 502239..503168 (-) 930 WP_243603111.1 cysteine synthase A -
  KIP81_RS02640 (KIP81_02650) - 503266..503892 (-) 627 WP_074480884.1 YigZ family protein -
  KIP81_RS02645 (KIP81_02655) comFA/cflA 503947..505245 (+) 1299 WP_243603112.1 DEAD/DEAH box helicase Machinery gene
  KIP81_RS02650 (KIP81_02660) - 505245..505910 (+) 666 WP_243603113.1 ComF family protein -
  KIP81_RS02655 (KIP81_02665) raiA 505987..506535 (+) 549 WP_024344660.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 49190.41 Da        Isoelectric Point: 9.6272

>NTDB_id=568238 KIP81_RS02645 WP_243603112.1 503947..505245(+) (comFA/cflA) [Streptococcus equinus strain SheepZ001]
MEDKNDYYGRIFVESQLSDELKEEAEKLPSMIKRKDNFTCNRCGSIVLPDNILQTGQTYCRECLVFGRNISDSYLYYFPQ
KSFLKNNSLNWQGRLTPYQNEVSEGMVSGIAEKKDLLVHAVTGAGKTEMIYHSVAKIIDDGGCVCIASPRIDVCLELYKR
MSRDFSCPITLLHGDAEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNKMLYYAVNQSLKKDGVKIFLTATST
DELDKKVRKGDLKKLHLARRFHANPLVVPKMLWLSGVLKSMKKGKIPKKLDLLLKNQRKSGYPLLIFFPNIEQGKRFSMV
LQEKFPTEKIGFVSSQTEDRLELVEKFRKNEITILVSTTILERGVTFPCVDVFVVLANHKLYTKSALVQISGRVGRAAKR
PTGELLFLHDGATKSMQQAIKEIKEMNKKGGF

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=568238 KIP81_RS02645 WP_243603112.1 503947..505245(+) (comFA/cflA) [Streptococcus equinus strain SheepZ001]
ATGGAAGATAAAAATGACTATTATGGAAGAATTTTTGTTGAGTCTCAATTGTCTGATGAGTTAAAAGAAGAAGCTGAAAA
ACTTCCTTCTATGATAAAAAGAAAAGACAATTTTACGTGTAACCGTTGCGGAAGCATTGTTTTACCAGATAATATTTTAC
AAACTGGTCAGACTTACTGCAGAGAATGTCTAGTTTTTGGTCGTAACATCAGTGATTCTTATCTATATTACTTTCCGCAA
AAAAGTTTTCTAAAAAATAATTCTCTAAACTGGCAAGGTCGACTGACCCCTTATCAAAATGAAGTGTCAGAAGGTATGGT
GTCAGGAATTGCTGAAAAGAAAGATTTATTAGTTCATGCTGTGACAGGAGCTGGTAAGACAGAGATGATTTATCACTCAG
TAGCAAAAATAATCGATGACGGTGGTTGTGTTTGTATTGCTAGCCCACGAATTGATGTTTGTTTAGAACTTTATAAACGT
ATGTCTCGTGATTTTTCATGTCCGATTACTTTATTACACGGGGATGCTGAGCCTTACAAACGAGCACCGCTCATTATTGC
AACAACTCATCAACTTTTAAAATTCTACCAAGCATTTGATTTATTAATTATTGATGAAGTTGATGCCTTTCCATTTGTTG
ACAATAAAATGCTGTATTACGCAGTAAATCAATCTTTAAAAAAAGATGGTGTCAAGATATTTTTAACAGCCACATCGACA
GATGAATTAGATAAAAAAGTTCGAAAAGGCGACTTAAAAAAATTGCATTTAGCCAGACGTTTTCACGCCAATCCTTTGGT
TGTTCCTAAAATGCTCTGGCTTAGTGGGGTGTTAAAGTCAATGAAAAAAGGGAAAATACCTAAAAAATTAGACTTGCTAC
TTAAAAATCAAAGAAAATCTGGATACCCCTTACTAATCTTTTTTCCAAATATAGAGCAGGGAAAAAGATTTTCGATGGTT
CTGCAAGAAAAATTTCCTACTGAGAAGATTGGTTTTGTGTCAAGTCAGACCGAAGATAGACTTGAATTAGTTGAAAAATT
TAGAAAGAACGAAATAACAATTTTAGTCAGCACAACCATCTTAGAACGTGGAGTCACGTTTCCTTGTGTTGACGTATTTG
TTGTATTAGCGAATCACAAATTATACACTAAAAGTGCCTTGGTTCAAATTTCTGGGCGAGTCGGTAGAGCTGCAAAACGA
CCAACAGGAGAATTATTATTTTTGCACGATGGCGCTACAAAATCTATGCAACAAGCGATTAAAGAAATAAAGGAAATGAA
CAAGAAAGGAGGATTTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(97-244)

Helicase conserved C-terminal domain (Helicase_C)

(291-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

62.061

98.843

0.613
  comFA/cflA Streptococcus pneumoniae D39

62.061

98.843

0.613
  comFA/cflA Streptococcus pneumoniae R6

62.061

98.843

0.613
  comFA/cflA Streptococcus pneumoniae TIGR4

62.061

98.843

0.613
  comFA/cflA Streptococcus mitis NCTC 12261

60.417

100

0.604
  comFA/cflA Streptococcus mitis SK321

60.417

100

0.604
  comFA Lactococcus lactis subsp. cremoris KW2

51.015

91.204

0.465
  comFA Latilactobacillus sakei subsp. sakei 23K

36.552

100

0.368
  comFA Bacillus subtilis subsp. subtilis str. 168

35.828

100

0.366