Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   KIK02_RS19740 Genome accession   NZ_CP075171
Coordinates   4228528..4228890 (+) Length   120 a.a.
NCBI ID   WP_233744252.1    Uniprot ID   -
Organism   Leptodesmis sichuanensis A121     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4223528..4233890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIK02_RS19715 (KIK02_19865) - 4223736..4224140 (-) 405 WP_390889305.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  KIK02_RS19720 (KIK02_19870) - 4224198..4225010 (-) 813 WP_233744248.1 inositol monophosphatase family protein -
  KIK02_RS19725 (KIK02_19875) - 4225034..4226425 (-) 1392 WP_233744249.1 BCD family MFS transporter -
  KIK02_RS19730 (KIK02_19880) - 4226620..4227567 (+) 948 WP_233744250.1 aldo/keto reductase -
  KIK02_RS19735 (KIK02_19885) - 4227867..4228379 (+) 513 WP_233744251.1 isoprenylcysteine carboxylmethyltransferase family protein -
  KIK02_RS19740 (KIK02_19890) pilH 4228528..4228890 (+) 363 WP_233744252.1 PleD family two-component system response regulator Machinery gene
  KIK02_RS19745 (KIK02_19895) - 4229095..4229970 (+) 876 WP_233748963.1 IS982 family transposase -
  KIK02_RS19750 (KIK02_19900) - 4230937..4231197 (-) 261 WP_233744253.1 hypothetical protein -
  KIK02_RS19755 (KIK02_19905) - 4231523..4232128 (-) 606 WP_233744254.1 carbonic anhydrase -
  KIK02_RS19760 (KIK02_19910) - 4232133..4232339 (-) 207 WP_233744255.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13546.64 Da        Isoelectric Point: 5.1601

>NTDB_id=568213 KIK02_RS19740 WP_233744252.1 4228528..4228890(+) (pilH) [Leptodesmis sichuanensis A121]
MQTILIVDDSSTVRQMVSEQLRTGGFEVMEAVDGEEAMEKIQAHPPDLVITDIVMPRKNGYDLTRWLKGSPNTKHIPVIM
CTSKSEEFDVYWGMKQGADAYITKPYHPPDLINAVKKLLP

Nucleotide


Download         Length: 363 bp        

>NTDB_id=568213 KIK02_RS19740 WP_233744252.1 4228528..4228890(+) (pilH) [Leptodesmis sichuanensis A121]
ATGCAGACAATTCTGATTGTGGATGACAGTTCTACCGTGCGGCAGATGGTTTCAGAGCAACTGAGAACAGGCGGCTTTGA
AGTGATGGAAGCTGTGGATGGAGAAGAGGCGATGGAAAAAATCCAGGCCCACCCTCCCGATCTGGTGATTACCGATATCG
TCATGCCGCGCAAAAATGGGTACGACTTAACTCGCTGGTTAAAAGGCAGTCCCAACACCAAACATATCCCGGTCATTATG
TGTACCAGTAAAAGCGAAGAATTTGATGTCTACTGGGGCATGAAACAGGGAGCCGACGCTTACATCACCAAGCCCTACCA
TCCACCGGATTTAATTAATGCGGTCAAGAAGTTGTTGCCGTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

55.462

99.167

0.55
  pilL-C Synechocystis sp. PCC 6803

41.525

98.333

0.408
  pilG Acinetobacter baumannii strain A118

42.982

95

0.408