Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   IOMTU133_RS19420 Genome accession   NZ_AP017302
Coordinates   4245503..4246099 (-) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain IOMTU 133     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4240503..4251099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOMTU133_RS33915 - 4240849..4241046 (-) 198 Protein_3910 TetR family transcriptional regulator -
  IOMTU133_RS19400 (IOMTU133_4032) - 4241139..4242722 (+) 1584 WP_003121915.1 flavin-containing monooxygenase -
  IOMTU133_RS19405 (IOMTU133_4033) - 4242719..4243606 (+) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  IOMTU133_RS19410 (IOMTU133_4034) - 4243680..4244219 (+) 540 WP_003111079.1 CbrC family protein -
  IOMTU133_RS19415 (IOMTU133_4035) - 4244232..4245380 (-) 1149 WP_003103930.1 acyl-CoA dehydrogenase family protein -
  IOMTU133_RS19420 (IOMTU133_4036) recR 4245503..4246099 (-) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  IOMTU133_RS19425 (IOMTU133_4037) - 4246178..4246504 (-) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  IOMTU133_RS19430 (IOMTU133_4038) dnaX 4246550..4248649 (-) 2100 WP_060853215.1 DNA polymerase III subunit gamma/tau -
  IOMTU133_RS19435 (IOMTU133_4039) - 4248686..4249552 (+) 867 WP_023657576.1 substrate-binding periplasmic protein -
  IOMTU133_RS19440 (IOMTU133_4040) - 4249731..4250813 (-) 1083 WP_003133016.1 type I restriction endonuclease -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=56813 IOMTU133_RS19420 WP_003087237.1 4245503..4246099(-) (recR) [Pseudomonas aeruginosa strain IOMTU 133]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=56813 IOMTU133_RS19420 WP_003087237.1 4245503..4246099(-) (recR) [Pseudomonas aeruginosa strain IOMTU 133]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTCGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGCGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48

Multiple sequence alignment