Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   MK801_RS03575 Genome accession   NZ_CP092748
Coordinates   687765..688763 (+) Length   332 a.a.
NCBI ID   WP_128267556.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 682765..693763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS03560 (MK801_03560) - 682930..684084 (+) 1155 WP_003129451.1 class I SAM-dependent RNA methyltransferase -
  MK801_RS03565 (MK801_03565) - 684232..686235 (+) 2004 WP_139008505.1 cell division site-positioning protein MapZ family protein -
  MK801_RS03570 (MK801_03570) - 686462..687550 (-) 1089 WP_057720067.1 Xaa-Pro peptidase family protein -
  MK801_RS03575 (MK801_03575) ccpA 687765..688763 (+) 999 WP_128267556.1 catabolite control protein A Regulator
  MK801_RS03580 (MK801_03580) - 688902..689867 (+) 966 WP_057720064.1 NAD(P)/FAD-dependent oxidoreductase -
  MK801_RS03585 (MK801_03585) - 690027..690587 (+) 561 WP_057720062.1 CvpA family protein -
  MK801_RS03590 (MK801_03590) mutS/mutS2 690632..692962 (+) 2331 WP_017864836.1 endonuclease MutS2 Machinery gene
  MK801_RS03595 (MK801_03595) trxA 693059..693373 (+) 315 WP_003129442.1 thioredoxin -

Sequence

Protein


Download         Length: 332 a.a.        Molecular weight: 36588.69 Da        Isoelectric Point: 4.9153

>NTDB_id=568035 MK801_RS03575 WP_128267556.1 687765..688763(+) (ccpA) [Lactococcus lactis strain 17M1]
MVESTTTIYDVARVAGVSMATVSRVVNGNANVKEKTRQKVLDAIAELDYRPNAVARGLASKRTTTVGVILPTITSTYFAA
ITRGVDDIASMYKYNMILANSDNDVEKEEKVLETFLSKQVDGIVYMGSSLDEKIRTSLKNSRTPVVLVGTIDGDKEIPSV
NIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQEALLEANIEFDENLVFEGNYSYEQGKALAERLLERGA
TSAVVSHDTVAVGLLSAMMDKGVKVPEDFEIISGANSPITQYTYPTLTSVNQPLYDLGAVAMRLLTKLMLKEDVEQNQLV
LDHEIFSRRSTK

Nucleotide


Download         Length: 999 bp        

>NTDB_id=568035 MK801_RS03575 WP_128267556.1 687765..688763(+) (ccpA) [Lactococcus lactis strain 17M1]
ATGGTAGAATCAACAACAACAATTTATGATGTGGCACGTGTCGCCGGAGTGTCAATGGCAACCGTTAGTCGTGTTGTAAA
TGGAAATGCAAATGTAAAGGAAAAGACGCGCCAGAAGGTCTTAGACGCTATTGCTGAGCTTGACTATCGTCCTAATGCAG
TTGCGCGTGGACTTGCAAGTAAACGTACAACAACAGTTGGTGTTATCTTGCCAACCATCACTTCAACTTACTTCGCAGCG
ATTACTCGCGGAGTCGATGATATCGCTTCCATGTATAAATACAACATGATTTTAGCTAATAGTGATAATGATGTTGAAAA
AGAAGAAAAAGTTTTAGAAACTTTCTTATCAAAACAAGTTGATGGAATCGTCTATATGGGTTCATCTTTAGATGAAAAAA
TTAGAACTTCCCTCAAAAATTCAAGAACACCTGTTGTTTTAGTTGGAACAATCGATGGAGATAAAGAAATTCCATCTGTT
AATATTGATTACCATTTGGCTGCTTATCAATCAACTAAAAAATTGATTGATAGCGGAAATAAAAAAATCGCTTATATCAT
GGGTTCATTGAAAGACGTTGAAAATACAGAACGTATGGTTGGTTATCAAGAAGCTTTGCTTGAAGCAAATATTGAATTTG
ATGAAAACCTCGTTTTTGAAGGTAATTATAGCTATGAACAAGGAAAAGCACTTGCTGAACGTTTACTTGAGCGAGGAGCA
ACTTCTGCAGTAGTATCACATGATACAGTAGCCGTTGGACTCTTGTCTGCAATGATGGATAAAGGAGTGAAAGTTCCTGA
AGATTTCGAAATTATCTCAGGTGCAAATTCACCAATTACTCAATATACATATCCAACTTTAACTTCTGTTAACCAACCCC
TTTACGATTTGGGAGCAGTAGCAATGCGTCTTTTGACAAAATTAATGCTTAAAGAAGATGTTGAACAAAATCAATTAGTT
TTGGATCATGAAATCTTTTCTCGTCGTTCTACCAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(7-52)

Periplasmic binding protein-like domain (Peripla_BP_3)

(173-331)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

99.699

100

0.997
  ccpA Streptococcus pneumoniae D39

57.1

99.699

0.569
  ccpA Streptococcus gordonii str. Challis substr. CH1

56.798

99.699

0.566