Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AVFI_RS04895 Genome accession   NZ_CP092712
Coordinates   1033816..1035846 (+) Length   676 a.a.
NCBI ID   WP_054775585.1    Uniprot ID   -
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1028816..1040846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS04870 (AVFI_04870) rsxB 1030523..1031107 (-) 585 WP_065639298.1 electron transport complex subunit RsxB -
  AVFI_RS04875 (AVFI_04875) rsxA 1031110..1031691 (-) 582 WP_005418573.1 electron transport complex subunit RsxA -
  AVFI_RS04880 (AVFI_04880) - 1031800..1032993 (-) 1194 WP_199414938.1 ISL3 family transposase -
  AVFI_RS04895 (AVFI_04895) uvrB 1033816..1035846 (+) 2031 WP_054775585.1 excinuclease ABC subunit UvrB Machinery gene
  AVFI_RS04900 (AVFI_04900) luxO 1036140..1037570 (+) 1431 WP_012534219.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AVFI_RS04905 (AVFI_04905) - 1037581..1037916 (+) 336 WP_012533672.1 Hpt domain-containing protein -
  AVFI_RS04910 (AVFI_04910) yvcK 1037905..1038783 (-) 879 WP_005418582.1 uridine diphosphate-N-acetylglucosamine-binding protein YvcK -
  AVFI_RS04915 (AVFI_04915) moaA 1039167..1040156 (+) 990 WP_054775586.1 GTP 3',8-cyclase MoaA -
  AVFI_RS04920 (AVFI_04920) moaC 1040169..1040648 (+) 480 WP_005418586.1 cyclic pyranopterin monophosphate synthase MoaC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 76744.48 Da        Isoelectric Point: 4.9728

>NTDB_id=567950 AVFI_RS04895 WP_054775585.1 1033816..1035846(+) (uvrB) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MSSAYELVSNYQPAGDQPQAIKTLNEGLENGLAHQTLLGVTGSGKTFTLANVIAHSGRPTIIMAHNKTLAAQLYGEMKAF
FPNNAVEYFVSYFDYYQPEAYVPTTDTFIEKDSSVNEHIEQMRLSATKALLERKDAIIIASVSAIYGLGDPKAYLSMMLH
LRRGDIINQRDMLRRLAELQYKRNDMAFERGTFRVRGEVLDIFPAESEHEAIRIEMFDDEVERISKFDPLTGSIIAKDMP
RCTIYPKTHYVTPREQVLDAIEKIKVDLAIRQKELLENNKLVEEQRITQRTQFDIEMMNELGFCSGIENYSRYLSGRPEG
EAPPTLFDYLPQDGLLIIDESHITVSQIGAMYKGDRSRKENLVEYGFRLPSALDNRPLRFEEFEALAPQTIYVSATPGKY
EIEKSDGEIAEQVVRPTGLLDPVIEVRPVATQVDDLLSEIRIRTKNNERVLVTTLTKRMAEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLEGKAILYADKITG
SMEKAIGETERRREKQQLHNEALGIVPQALKKDVADILELGDMTKNKRKVVAPKIKLSEVAEEGASYSSMSPQQLEKAIQ
KLESKMYQHAKDLEFEQAAQVRDEIDNLRKQFIVNS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=567950 AVFI_RS04895 WP_054775585.1 1033816..1035846(+) (uvrB) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGTCTAGTGCGTATGAACTCGTATCTAATTATCAACCTGCGGGCGATCAACCTCAAGCGATAAAAACACTTAATGAAGG
TCTTGAAAATGGGTTAGCTCACCAAACGTTACTGGGGGTTACTGGTTCAGGTAAAACATTTACTCTTGCTAATGTTATTG
CTCATTCTGGTCGCCCAACGATCATTATGGCTCATAACAAAACATTAGCAGCACAGTTATATGGTGAAATGAAAGCCTTC
TTCCCAAATAACGCCGTTGAATATTTTGTTTCTTATTTTGATTATTACCAACCAGAAGCCTATGTACCAACGACGGATAC
ATTTATAGAAAAAGACTCATCGGTTAATGAGCACATTGAGCAAATGCGTTTATCAGCAACCAAAGCACTATTAGAACGCA
AAGATGCGATTATTATTGCTTCTGTTTCAGCAATATATGGCTTAGGTGATCCAAAAGCCTATTTGAGTATGATGCTGCAT
TTACGCCGTGGTGACATTATTAATCAAAGAGACATGCTGCGTCGTTTAGCCGAATTGCAATATAAGCGTAATGACATGGC
TTTTGAACGAGGTACATTTCGAGTTCGTGGGGAAGTGTTGGATATTTTTCCAGCAGAGTCTGAACATGAAGCCATTCGTA
TTGAAATGTTTGATGATGAAGTTGAGCGCATCAGTAAGTTTGATCCATTAACAGGGTCAATTATAGCGAAAGATATGCCA
CGTTGTACTATCTACCCTAAAACACACTATGTAACCCCTCGTGAACAGGTCTTAGATGCGATCGAAAAGATCAAAGTCGA
TCTTGCTATTAGACAAAAAGAATTGCTAGAAAATAATAAGCTTGTTGAAGAGCAGCGTATCACTCAGCGAACTCAATTTG
ATATTGAAATGATGAACGAACTGGGTTTTTGCTCAGGGATTGAAAACTATTCACGTTATTTGAGTGGTCGTCCAGAAGGT
GAGGCTCCTCCAACCTTGTTTGATTATTTACCACAAGATGGCCTATTAATTATTGATGAATCTCATATTACCGTTTCTCA
AATAGGTGCTATGTATAAGGGGGACCGCTCACGTAAAGAGAATTTAGTCGAGTATGGATTTAGACTACCATCGGCATTAG
ACAATCGTCCGTTGCGTTTTGAAGAATTTGAAGCATTAGCCCCTCAAACTATTTATGTATCAGCTACTCCTGGTAAATAT
GAGATAGAAAAGTCAGATGGAGAAATTGCCGAACAAGTCGTACGTCCAACTGGATTATTAGATCCTGTGATTGAAGTTCG
TCCAGTGGCGACACAAGTGGATGATTTATTATCAGAGATCCGTATTCGAACTAAAAACAATGAACGAGTATTAGTGACAA
CATTGACGAAGCGTATGGCTGAAGACCTAACGGAATATCTTGATGAGCATGGCGTAAAAGTTCGTTATTTACATTCAGAT
ATTGATACGGTTGAACGTGTCGAAATTATTCGTGATTTACGTCTAGGTGAGTTTGATGTACTTGTTGGCATTAACTTACT
TCGAGAAGGCCTAGACATGCCTGAGGTTTCATTGGTTGCGATTTTAGATGCAGATAAAGAAGGCTTTTTACGTTCTGAAC
GTTCGTTAATTCAAACGATTGGTCGTGCTGCTCGTAACTTAGAGGGTAAAGCCATTCTTTATGCTGATAAGATCACTGGT
TCAATGGAAAAAGCCATTGGTGAAACAGAAAGACGAAGAGAGAAGCAGCAATTACACAATGAAGCGTTAGGTATTGTTCC
ACAAGCGCTTAAGAAAGACGTTGCCGATATTCTTGAATTGGGTGATATGACTAAAAATAAACGTAAAGTCGTTGCACCTA
AGATTAAGTTATCTGAAGTTGCAGAAGAAGGAGCTAGTTACAGTTCGATGTCGCCACAACAGTTAGAAAAGGCGATTCAG
AAGCTAGAAAGTAAGATGTATCAACATGCGAAAGACTTGGAATTTGAACAAGCTGCACAAGTTCGAGATGAGATTGATAA
TTTAAGAAAACAATTTATAGTGAATAGTTAG

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(636-671)

Helicase conserved C-terminal domain (Helicase_C)

(437-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

Type III restriction enzyme, res subunit (ResIII)

(15-133)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.127

97.781

0.549
  uvrB Streptococcus pneumoniae R6

56.127

97.781

0.549
  uvrB Streptococcus pneumoniae D39

56.127

97.781

0.549