Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AVFI_RS02890 Genome accession   NZ_CP092712
Coordinates   609909..610634 (-) Length   241 a.a.
NCBI ID   WP_005417820.1    Uniprot ID   Q5E7D8
Organism   Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 604909..615634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVFI_RS02865 (AVFI_02865) - 604961..606895 (+) 1935 WP_155662217.1 transglycosylase SLT domain-containing protein -
  AVFI_RS02870 (AVFI_02870) trpR 606991..607317 (+) 327 WP_012533782.1 trp operon repressor -
  AVFI_RS02875 (AVFI_02875) yjjX 607286..607798 (-) 513 WP_054776043.1 inosine/xanthosine triphosphatase -
  AVFI_RS02880 (AVFI_02880) pheA 607821..608999 (-) 1179 WP_012534012.1 prephenate dehydratase -
  AVFI_RS02885 (AVFI_02885) hpf 609115..609468 (-) 354 WP_005417819.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  AVFI_RS02890 (AVFI_02890) comL 609909..610634 (-) 726 WP_005417820.1 outer membrane protein assembly factor BamD Machinery gene
  AVFI_RS02895 (AVFI_02895) rluD 610796..611770 (+) 975 WP_005417821.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AVFI_RS02900 (AVFI_02900) pgeF 611773..612507 (+) 735 WP_188863824.1 peptidoglycan editing factor PgeF -
  AVFI_RS02905 (AVFI_02905) clpC 612613..615198 (+) 2586 WP_011261322.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27831.63 Da        Isoelectric Point: 5.4385

>NTDB_id=567938 AVFI_RS02890 WP_005417820.1 609909..610634(-) (comL) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MKRLTISSLLAVSLLVGCSSSDDVIPDIPPSELYAQAQVSLQAGNWTSAIERLEALDSRYPFGAYSEQVQLDLIYVYYKN
DDLALGLATIERFTRLNPTHPKADWVLYMRGLTHMAQDRSFMHDLFRVDRSDRDPEPARSAFKDFKRLLERYPNSLYAED
AQTRMYALKNRLADYELATADFYLRREAWISAINRCQELQRTYPDTEAARKSLTIMLSAYKELKLEDAIKRTEELIALNP
Q

Nucleotide


Download         Length: 726 bp        

>NTDB_id=567938 AVFI_RS02890 WP_005417820.1 609909..610634(-) (comL) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGAAACGCTTAACCATTTCTTCATTATTAGCTGTATCTTTACTGGTTGGTTGCTCAAGTAGTGATGATGTAATTCCAGA
TATTCCACCATCAGAATTATACGCTCAAGCTCAAGTATCTTTACAAGCAGGTAATTGGACGAGCGCAATTGAGCGTCTTG
AAGCCTTAGATTCTCGATACCCTTTTGGCGCTTATTCTGAACAAGTTCAGTTAGACCTTATTTATGTTTATTATAAAAAT
GATGATCTTGCATTAGGTCTTGCAACTATCGAGAGATTCACTCGTTTAAACCCAACCCATCCAAAAGCTGACTGGGTCCT
TTACATGCGTGGATTAACGCATATGGCTCAAGATAGAAGTTTCATGCATGATTTATTTAGAGTTGATCGTTCAGATCGAG
ATCCAGAACCAGCTCGCTCAGCTTTTAAAGATTTTAAACGATTATTAGAAAGATACCCTAATAGTCTTTACGCTGAAGAT
GCACAAACTCGTATGTACGCACTTAAAAATCGCTTAGCGGATTATGAATTAGCAACAGCTGACTTTTATTTACGACGAGA
AGCTTGGATCTCTGCCATTAATCGTTGTCAAGAATTACAACGTACTTATCCAGATACAGAAGCTGCAAGAAAATCACTAA
CAATTATGCTTTCAGCTTACAAAGAATTAAAACTGGAAGATGCAATTAAGCGAACCGAAGAACTTATTGCGTTGAATCCA
CAATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-234)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5E7D8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

41.256

92.531

0.382
  comL Neisseria meningitidis MC58

41.256

92.531

0.382