Detailed information NTG0567939

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: AVFI_RS02905
• Genome accession: NZ_CP092712
• Coordinates: 612613..615198 (+)
• Length: 861 a.a.
• NCBI ID: WP_011261322.1
• Uniprot ID: Q5E7D5
• Organism: Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 607613..620198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AVFI_RS02880 (AVFI_02880)	pheA	607821..608999 (-)	1179	WP_012534012.1	prephenate dehydratase	-
AVFI_RS02885 (AVFI_02885)	hpf	609115..609468 (-)	354	WP_005417819.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
AVFI_RS02890 (AVFI_02890)	comL	609909..610634 (-)	726	WP_005417820.1	outer membrane protein assembly factor BamD	Machinery gene
AVFI_RS02895 (AVFI_02895)	rluD	610796..611770 (+)	975	WP_005417821.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
AVFI_RS02900 (AVFI_02900)	pgeF	611773..612507 (+)	735	WP_188863824.1	peptidoglycan editing factor PgeF	-
AVFI_RS02905 (AVFI_02905)	clpC	612613..615198 (+)	2586	WP_011261322.1	ATP-dependent chaperone ClpB	Regulator

Sequence

Protein

• Length: 861 a.a.
• Molecular weight: 96325.21 Da
• Isoelectric Point: 5.1566

>NTDB_id=567939 AVFI_RS02905 WP_011261322.1 612613..615198(+) (clpC) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
MRLDRFTSKFQMAISDAQSLALGQDHQYIEPTHLMVALLNQDGSTIRPLLTLLNVDVTQLRSKLTEILDKTPKVTGIGGD
VQLSSNMGVIFNLCDKVAQKRKDAYISSEIFMLAAIEDKGPLGNLLRELGLTEPKISKSIDEIRGGEKVNDQNAEEKRQA
LEKFTVDLTERAEQGKLDPVIGRDDEIRRTIQVLQRRTKNNPVIIGQPGVGKTAIVEGLAQRIINGEVPEGLKNKRVLSL
DIGALVAGAKFRGEFEERLKAVLNELAKEEGSVILFIDEVHTMVGAGKGEGSMDAGNMLKPALARGELHCVGATTLDEYR
QYIEKDPALERRFQKVLVDEPTVEDTVAILRGLKERYEIHHHVEITDPAIVAAASLSHRYISDRQLPDKAIDLIDEAASS
IRMEIDSKPESLDKLDRKIIQLKIEQQALVKESDDASLKRLDSLNLELMQKEREYAELEEVWKAEKAALSGTQHIKTELE
TARSNMEIARRAGDLNRMSELQYGRIPELEKQLDLAAQAEMQEMSLLKNKVTDAEIAEVLSRQTGIPVNKMLEGERDKLL
KMEEVLHHRVIGQAEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKSLANFMFDSEDAMVRIDMSEFMEK
HSVARLVGAPPGYVGYEEGGYLTEAVRRKPYSVLLLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFKNTVIIMTSNL
GSEKIQQHFGELNYAGIKEVVMDVVSQHFRPEFLNRVDETVVFHPLAQEHIKNIASIQLQRLEKRLNEKDYQLQVTDEAL
NLIAEAGFDPVYGARPLKRAIQTYIENPLAQDILSGKLRVGEVIKLKVKNEQLIATQNDDF

Nucleotide

• Length: 2586 bp

>NTDB_id=567939 AVFI_RS02905 WP_011261322.1 612613..615198(+) (clpC) [Aliivibrio fischeri ATCC 7744 = JCM 18803 = DSM 507]
ATGCGTTTAGATCGATTCACTAGTAAATTTCAAATGGCCATCTCTGATGCTCAATCATTAGCATTAGGTCAAGATCATCA
ATATATCGAACCAACCCATTTAATGGTTGCACTGTTAAATCAGGATGGAAGTACGATAAGGCCTTTACTTACTCTTCTAA
ATGTAGACGTAACACAATTACGTTCAAAACTAACTGAAATATTAGATAAGACACCAAAGGTAACGGGTATCGGTGGTGAT
GTTCAACTTTCATCTAATATGGGTGTTATTTTTAATCTTTGCGATAAAGTCGCTCAGAAACGCAAAGACGCTTATATCTC
TTCTGAAATATTCATGCTTGCCGCAATCGAAGATAAAGGGCCTTTGGGTAATTTACTTCGAGAATTAGGATTAACTGAAC
CTAAAATATCTAAGTCAATCGATGAGATCCGTGGTGGCGAAAAAGTTAATGATCAAAATGCTGAAGAAAAACGTCAAGCA
TTAGAAAAGTTTACTGTTGATTTAACTGAGCGAGCAGAGCAAGGAAAACTAGATCCTGTTATTGGTCGTGATGATGAAAT
ACGAAGAACAATTCAGGTATTGCAACGTCGAACTAAAAATAATCCAGTTATCATAGGTCAACCTGGTGTCGGCAAGACAG
CTATTGTTGAAGGGTTAGCGCAACGTATTATAAATGGTGAAGTACCTGAAGGTTTAAAAAATAAACGAGTACTTTCTTTA
GATATTGGTGCATTGGTAGCTGGTGCTAAATTCCGAGGTGAATTTGAAGAGCGTTTAAAAGCGGTTTTAAATGAGTTAGC
GAAAGAAGAAGGTAGTGTCATCCTCTTTATTGATGAAGTACATACAATGGTAGGTGCTGGTAAAGGTGAAGGCTCTATGG
ATGCCGGCAACATGCTTAAACCTGCACTCGCACGTGGTGAACTACATTGTGTCGGAGCAACAACTCTTGATGAATATCGT
CAGTATATTGAAAAAGATCCAGCATTAGAGCGTCGTTTTCAAAAAGTACTTGTTGACGAACCAACAGTTGAAGATACCGT
TGCAATTTTGCGTGGTTTAAAAGAGCGCTATGAAATTCATCATCATGTTGAAATTACCGATCCTGCGATCGTAGCAGCAG
CAAGCCTGTCACATCGTTATATTTCGGATCGTCAATTACCGGATAAAGCGATAGATTTAATTGATGAAGCAGCATCAAGC
ATTCGTATGGAAATTGATTCAAAACCAGAATCATTAGATAAGCTTGATCGTAAGATAATTCAATTAAAGATAGAACAGCA
AGCACTAGTAAAAGAAAGCGATGATGCGAGCTTAAAGCGTCTTGACTCTTTAAATCTTGAATTAATGCAAAAAGAACGTG
AATACGCAGAGCTTGAAGAAGTGTGGAAAGCTGAAAAAGCGGCTTTATCTGGCACTCAGCATATAAAAACAGAATTAGAA
ACAGCTCGAAGTAATATGGAAATTGCACGTCGTGCAGGTGATCTAAATAGAATGTCAGAGCTGCAATATGGACGTATTCC
AGAATTAGAGAAACAACTAGATCTTGCCGCTCAAGCTGAAATGCAAGAAATGAGCTTATTAAAAAACAAAGTGACGGATG
CAGAGATAGCAGAAGTGCTTTCACGTCAGACGGGCATTCCTGTAAATAAAATGCTTGAAGGTGAAAGAGATAAGCTATTA
AAGATGGAAGAGGTATTACATCACCGAGTAATAGGCCAGGCTGAAGCTGTCGAAGCTGTCTCAAATGCAATTCGTCGTAG
TCGTGCCGGTCTATCAGATCCAAATCGACCAATCGGTTCATTCTTGTTTTTAGGCCCAACAGGGGTTGGTAAAACGGAAT
TATGTAAATCACTCGCTAACTTTATGTTTGATAGTGAAGATGCGATGGTACGTATCGACATGTCAGAGTTTATGGAGAAA
CATTCCGTTGCTCGTTTAGTAGGTGCACCTCCTGGTTATGTTGGTTATGAAGAGGGGGGATACTTAACAGAAGCAGTAAG
ACGCAAACCTTATTCAGTTTTATTATTAGATGAAGTAGAGAAAGCACATCCAGATGTATTTAATATTCTACTTCAAGTTC
TTGATGATGGCCGCTTAACTGATGGTCAGGGAAGAACGGTTGATTTTAAAAATACCGTTATCATTATGACATCGAACTTA
GGTTCAGAAAAAATTCAGCAGCACTTTGGTGAGTTGAATTATGCTGGCATAAAAGAAGTCGTAATGGATGTTGTGAGTCA
ACATTTTAGACCAGAGTTTTTAAACCGTGTTGATGAAACCGTAGTATTCCATCCATTGGCACAAGAACACATTAAGAATA
TCGCTTCTATTCAATTACAACGCTTAGAAAAACGTTTGAATGAAAAAGATTACCAATTGCAAGTAACAGACGAAGCGTTA
AACCTAATTGCTGAGGCAGGTTTTGACCCTGTTTATGGAGCAAGACCATTAAAACGAGCAATTCAGACATATATAGAGAA
CCCACTTGCTCAGGATATATTGAGTGGAAAGCTAAGGGTTGGAGAAGTAATTAAGTTGAAAGTTAAAAATGAACAGCTAA
TTGCGACTCAAAATGACGACTTTTGA

Domains

Predicted by InterProScan.

• ATPase family associated with various cellular activities (AAA) (AAA) (204-335)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (766-845)

• AAA lid domain (AAA_lid_9) (342-444)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (94-145)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• AAA domain (Cdc48 subfamily) (AAA_2) (596-759)

3D structure

• AlphaFold DB: Q5E7D5

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	45.79	100	0.461
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	43.438	100	0.434
clpE	Streptococcus pneumoniae Rx1	48.593	78.397	0.381
clpE	Streptococcus pneumoniae D39	48.593	78.397	0.381
clpE	Streptococcus pneumoniae R6	48.593	78.397	0.381
clpC	Lactococcus lactis subsp. cremoris KW2	46.165	80.256	0.37