Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LPE509_RS10730 Genome accession   NC_020521
Coordinates   2432599..2433147 (-) Length   182 a.a.
NCBI ID   WP_010946663.1    Uniprot ID   -
Organism   Legionella pneumophila subsp. pneumophila LPE509     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2427599..2438147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPE509_RS10710 (LPE509_02278) aroK 2428329..2428856 (-) 528 WP_010946667.1 shikimate kinase AroK -
  LPE509_RS10715 (LPE509_02279) pilQ 2429302..2431398 (-) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  LPE509_RS10720 (LPE509_02280) pilP 2431402..2431989 (-) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  LPE509_RS10725 (LPE509_02281) pilO 2431986..2432585 (-) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPE509_RS10730 (LPE509_02282) pilN 2432599..2433147 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  LPE509_RS10735 (LPE509_02283) pilM 2433151..2434215 (-) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  LPE509_RS10740 (LPE509_02284) ravI 2434632..2435642 (+) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 21267.04 Da        Isoelectric Point: 10.1404

>NTDB_id=56786 LPE509_RS10730 WP_010946663.1 2432599..2433147(-) (pilN) [Legionella pneumophila subsp. pneumophila LPE509]
MTEINLLPWREQKREQEKKLFTTMLLIGIIIAAAIVFLMNSYVSHLISNQMNRNQILQKEITALDEQIKEIKALKQIREG
LISRMSIVQNLQSTRTLMVHLFDELIKITPPGVYITKMQREHDVVTLWGYSESNTSISILMRNIEANVWIQNPVLTEIKK
NVEKKQSPNNEFKLSFVLKPKY

Nucleotide


Download         Length: 549 bp        

>NTDB_id=56786 LPE509_RS10730 WP_010946663.1 2432599..2433147(-) (pilN) [Legionella pneumophila subsp. pneumophila LPE509]
ATGACTGAAATTAATTTATTGCCATGGCGTGAACAAAAACGTGAGCAGGAAAAGAAATTATTTACAACCATGCTATTGAT
AGGAATTATCATCGCTGCAGCAATTGTTTTTTTAATGAACTCTTATGTTTCTCATTTAATAAGTAATCAAATGAACCGAA
ATCAGATTTTACAAAAAGAAATTACAGCTTTAGATGAACAGATCAAGGAGATTAAAGCATTAAAACAAATCAGGGAAGGT
TTGATTTCAAGAATGTCGATTGTGCAGAATCTGCAGTCAACAAGAACTTTAATGGTTCACTTATTTGATGAATTAATAAA
AATTACTCCTCCAGGAGTTTACATAACCAAGATGCAAAGAGAACACGATGTAGTAACACTCTGGGGGTATTCCGAATCGA
ATACAAGTATTTCTATTTTGATGAGAAATATAGAGGCTAATGTCTGGATACAGAACCCTGTTCTAACTGAAATTAAAAAA
AATGTTGAAAAAAAACAGTCTCCAAACAATGAATTTAAATTAAGTTTTGTGCTTAAACCCAAATATTAG

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

99.451

100

0.995

Multiple sequence alignment