Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilP   Type   Machinery gene
Locus tag   LPE509_RS10720 Genome accession   NC_020521
Coordinates   2431402..2431989 (-) Length   195 a.a.
NCBI ID   WP_010946665.1    Uniprot ID   Q5ZX03
Organism   Legionella pneumophila subsp. pneumophila LPE509     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 2426402..2436989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPE509_RS10705 (LPE509_02277) aroB 2427233..2428342 (-) 1110 WP_010946668.1 3-dehydroquinate synthase -
  LPE509_RS10710 (LPE509_02278) aroK 2428329..2428856 (-) 528 WP_010946667.1 shikimate kinase AroK -
  LPE509_RS10715 (LPE509_02279) pilQ 2429302..2431398 (-) 2097 WP_010946666.1 type IV pilus secretin PilQ Machinery gene
  LPE509_RS10720 (LPE509_02280) pilP 2431402..2431989 (-) 588 WP_010946665.1 pilus assembly protein PilP Machinery gene
  LPE509_RS10725 (LPE509_02281) pilO 2431986..2432585 (-) 600 WP_014841277.1 type 4a pilus biogenesis protein PilO Machinery gene
  LPE509_RS10730 (LPE509_02282) pilN 2432599..2433147 (-) 549 WP_010946663.1 PilN domain-containing protein Machinery gene
  LPE509_RS10735 (LPE509_02283) pilM 2433151..2434215 (-) 1065 WP_010946662.1 type IV pilus assembly protein PilM Machinery gene
  LPE509_RS10740 (LPE509_02284) ravI 2434632..2435642 (+) 1011 WP_010946661.1 Dot/Icm T4SS effector RavI -

Sequence


Protein


Download         Length: 195 a.a.        Molecular weight: 22343.91 Da        Isoelectric Point: 10.3617

>NTDB_id=56784 LPE509_RS10720 WP_010946665.1 2431402..2431989(-) (pilP) [Legionella pneumophila subsp. pneumophila LPE509]
MIIKNNQTLLILGFFGNSLRTLLTSENFRKSLFTALLVLLLSACSGDNSDLVKYINEVKSRPGRPIEPIPKFAPLPIFRF
PENDNRRNPFKPIDQKKRNDIYAPDKKRPKQPLESFPLDALKFVGTLKKDNEIWALIKQPDGQISRVRVGDYMGQNYGRI
ILIKNDLIKLEETVQKSGTWEKQSTTINLDTGKQE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=56784 LPE509_RS10720 WP_010946665.1 2431402..2431989(-) (pilP) [Legionella pneumophila subsp. pneumophila LPE509]
ATGATAATTAAAAATAACCAGACTCTTCTTATATTAGGCTTTTTCGGAAATTCTCTGCGCACTTTACTCACCTCAGAGAA
TTTCCGAAAAAGCCTATTCACAGCGTTATTGGTTCTATTACTTAGTGCCTGCTCTGGTGATAACAGTGACCTTGTTAAGT
ACATCAACGAAGTGAAATCAAGACCAGGAAGACCTATCGAGCCTATTCCCAAATTCGCCCCTTTGCCAATTTTTAGATTT
CCAGAAAACGACAATAGGCGAAATCCATTCAAGCCTATTGATCAAAAAAAGAGAAATGATATTTATGCCCCAGATAAAAA
AAGGCCTAAGCAGCCTTTGGAATCTTTTCCTCTGGATGCTTTAAAATTTGTAGGTACTTTAAAAAAAGACAATGAAATCT
GGGCTCTGATTAAACAACCTGACGGTCAGATTAGCCGTGTTAGGGTTGGAGATTACATGGGACAAAATTATGGACGTATT
ATTTTGATTAAAAATGATCTCATTAAATTGGAAGAAACTGTACAGAAATCAGGAACGTGGGAAAAACAGTCCACCACAAT
TAATTTGGATACTGGCAAGCAGGAGTGA

Domains


Predicted by InterproScan.

(50-189)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q5ZX03

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Legionella pneumophila strain ERS1305867

96.923

100

0.969


Multiple sequence alignment