Detailed information NTG0056783

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IOMTU133_RS07485
• Genome accession: NZ_AP017302
• Coordinates: 1632467..1633471 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain IOMTU 133
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1627467..1638471

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IOMTU133_RS07455 (IOMTU133_1556)	fghA	1627559..1628410 (+)	852	WP_003092349.1	S-formylglutathione hydrolase	-
IOMTU133_RS07460 (IOMTU133_1557)	ispF	1628481..1628954 (+)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
IOMTU133_RS07465 (IOMTU133_1558)	truD	1628951..1630018 (+)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
IOMTU133_RS07470 (IOMTU133_1559)	surE	1630006..1630755 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
IOMTU133_RS07475 (IOMTU133_1560)	-	1630788..1631423 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
IOMTU133_RS07480	-	1631469..1632362 (+)	894	WP_017148388.1	peptidoglycan DD-metalloendopeptidase family protein	-
IOMTU133_RS07485 (IOMTU133_1562)	rpoS	1632467..1633471 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
IOMTU133_RS07490 (IOMTU133_1563)	fdxA	1633898..1634221 (-)	324	WP_003092272.1	ferredoxin FdxA	-
IOMTU133_RS07495 (IOMTU133_1564)	mutS	1634288..1636855 (-)	2568	WP_003122151.1	DNA mismatch repair protein MutS	-
IOMTU133_RS07500 (IOMTU133_1566)	-	1636981..1637988 (-)	1008	WP_023092575.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=56783 IOMTU133_RS07485 WP_003113871.1 1632467..1633471(+) (rpoS) [Pseudomonas aeruginosa strain IOMTU 133]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=56783 IOMTU133_RS07485 WP_003113871.1 1632467..1633471(+) (rpoS) [Pseudomonas aeruginosa strain IOMTU 133]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCTTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653