Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MID12_RS26590 Genome accession   NZ_CP092644
Coordinates   6577549..6579687 (+) Length   712 a.a.
NCBI ID   WP_040258371.1    Uniprot ID   -
Organism   Streptomyces sp. SCSIO ZS0520     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6572549..6584687
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MID12_RS26570 - 6573568..6574473 (-) 906 WP_263171229.1 pseudouridine-5'-phosphate glycosidase -
  MID12_RS26575 - 6574644..6575333 (-) 690 WP_263171231.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  MID12_RS26580 - 6575452..6576360 (-) 909 WP_040254567.1 glycerophosphodiester phosphodiesterase -
  MID12_RS26585 - 6576640..6577485 (+) 846 WP_263171237.1 MHYT domain-containing protein -
  MID12_RS26590 uvrB 6577549..6579687 (+) 2139 WP_040258371.1 excinuclease ABC subunit UvrB Machinery gene
  MID12_RS26595 - 6579895..6580473 (+) 579 WP_040254570.1 TerD family protein -
  MID12_RS26600 - 6580690..6582720 (+) 2031 WP_263171245.1 TerD family protein -
  MID12_RS26605 - 6582803..6584191 (-) 1389 WP_263171248.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 79894.44 Da        Isoelectric Point: 4.8473

>NTDB_id=567655 MID12_RS26590 WP_040258371.1 6577549..6579687(+) (uvrB) [Streptomyces sp. SCSIO ZS0520]
MRPVTQIERTVAPFEVVSPYQPSGDQPTAIAELEKRVTAGEKDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVSLKVGDEIDRDDLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISDDDHLYVFPASHYVAGPERLERAVGDIEKELGERLTELEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGVENYSMH
FDGRLPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGTYEMSRSDGHVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRSRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMERAIEETNRRREKQIAYNTANGVDPQPLRKKINDIVATIAREQVDTEKLLGTGYRQASNGKAKAPVPALGKA
GADGGKPAGKKKAGKTTPTTTPAAELAQQIEEMTERMRAAAADLQFEIAARLRDEVSEMKKELRQMREAGQA

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=567655 MID12_RS26590 WP_040258371.1 6577549..6579687(+) (uvrB) [Streptomyces sp. SCSIO ZS0520]
ATGCGGCCCGTAACCCAGATCGAACGCACCGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGTGACCAGCC
CACCGCCATCGCCGAGCTGGAGAAGCGCGTCACCGCGGGTGAGAAGGATGTCGTCCTCCTCGGCGCGACCGGCACCGGCA
AGTCCGCGACCACCGCGTGGATGATCGAGCGGCTCCAGCGCCCCACGCTGGTCATGGCACCGAACAAGACCCTGGCCGCA
CAGCTCGCCAACGAGTTCCGCGAACTCCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGCCTGCGGCACT
CCGCGACCAACTCGCTGCTCACCCGGCGCGACGTCGTCGTGGTCGCCTCCGTCTCCTGCATCTACGGCCTCGGCACACCG
CAGGAGTACGTGGACCGCATGGTCTCCCTCAAGGTCGGCGACGAGATCGACCGGGACGACCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACCTCGCCTTCACCCGGGGCACCTTCCGGGTCCGCGGCGACACCATCGAGATCTTCCCGG
TGTACGAGGAACTCGCCGTGCGCATCGAGATGTTCGGCGACGAGATCGAGGCGCTGTCCACCCTGCACCCGCTCACCGGC
GAGGTCATCAGCGACGACGACCACCTCTACGTCTTCCCCGCCTCCCACTACGTCGCCGGACCCGAGCGCCTGGAGCGCGC
CGTCGGCGACATCGAGAAGGAGCTGGGCGAGCGGCTCACCGAACTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACCTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGCCTGCCCGGCTCCCCGCCGAACACCCTCCTCGACTACTTCCCCGACGACTTCCTCCTCGTCATCGACGA
GTCCCATGTCACCGTCCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGCACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCGCTGGACAACCGCCCGCTGAAATGGGAGGAGTTCCAGGAGCGCATCGGGCAGACGGTGTACCTC
TCGGCCACCCCCGGCACCTACGAGATGTCCCGCTCCGACGGCCATGTCGAGCAGATCATCCGCCCCACCGGCCTGGTGGA
CCCGGAGGTCGTCGTCAAGCCGACCGAGGGGCAGATCGACGACCTGGTGCACGAGATCCGCAGCCGCACCGAGAAGGACG
AGCGCGTCCTGGTGACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTCGAACTGGGCATCCAGGTC
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGGGTGGAGCTCCTGCGGGAGCTGCGGGCCGGTGAGTACGACGTCCT
CGTCGGCATCAACCTGCTGCGTGAGGGCCTCGACCTGCCGGAGGTCTCCCTCGTCGCCATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGGACCTCCCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCCGGACAGGTCCATATGTAC
GCCGACAAGATCACCCCGGCGATGGAGCGGGCCATCGAGGAGACCAACCGGCGCCGGGAGAAGCAGATCGCCTACAACAC
GGCCAACGGCGTCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTGGCGACCATCGCCCGCGAGCAGGTCGACA
CCGAGAAGCTGCTCGGCACCGGCTACCGGCAGGCGTCGAACGGCAAGGCCAAGGCGCCGGTGCCCGCGCTCGGCAAGGCC
GGGGCGGACGGAGGCAAGCCCGCCGGGAAGAAGAAGGCGGGCAAGACCACGCCCACCACCACCCCCGCCGCCGAACTCGC
CCAGCAGATCGAGGAGATGACCGAGCGGATGCGGGCCGCCGCGGCGGACCTGCAGTTCGAGATCGCGGCCCGGCTGCGGG
ACGAGGTCTCCGAGATGAAGAAGGAACTGCGCCAGATGCGCGAGGCCGGTCAGGCCTGA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB/uvrC motif (UVR)

(668-701)

UvrB interaction domain (UvrB_inter)

(168-257)

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(442-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.686

96.629

0.548
  uvrB Streptococcus pneumoniae R6

56.686

96.629

0.548
  uvrB Streptococcus pneumoniae D39

56.686

96.629

0.548