NTDB

Overview

Name	comGA	Type	Machinery gene
Locus tag	KIV13_RS11915	Genome accession	NZ_CP075055
Coordinates	2472445..2473515 (-)	Length	356 a.a.
NCBI ID	WP_012117985.1	Uniprot ID	A0A411A7V3
Organism	Bacillus velezensis strain YYC
Function	dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2467445..2478515

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIV13_RS11865 (KIV13_11865)	sipW	2467512..2468096 (-)	585	WP_015240205.1	signal peptidase I SipW	-
KIV13_RS11870 (KIV13_11870)	tapA	2468068..2468739 (-)	672	WP_020954230.1	amyloid fiber anchoring/assembly protein TapA	-
KIV13_RS11875 (KIV13_11875)	-	2468998..2469327 (+)	330	WP_020954231.1	DUF3889 domain-containing protein	-
KIV13_RS11880 (KIV13_11880)	-	2469367..2469546 (-)	180	WP_003153093.1	YqzE family protein	-
KIV13_RS11885 (KIV13_11885)	comGG	2469603..2469980 (-)	378	WP_032866434.1	competence type IV pilus minor pilin ComGG	Machinery gene
KIV13_RS19585	comGF	2469981..2470148 (-)	168	WP_235183824.1	ComGF family competence protein	Machinery gene
KIV13_RS19590	-	2470145..2470339 (-)	195	WP_225917419.1	hypothetical protein	-
KIV13_RS11895 (KIV13_11895)	comGE	2470383..2470697 (-)	315	WP_007408323.1	competence type IV pilus minor pilin ComGE	-
KIV13_RS11900 (KIV13_11900)	comGD	2470681..2471118 (-)	438	WP_007408322.1	competence type IV pilus minor pilin ComGD	Machinery gene
KIV13_RS11905 (KIV13_11905)	comGC	2471108..2471416 (-)	309	WP_003153087.1	competence type IV pilus major pilin ComGC	Machinery gene
KIV13_RS11910 (KIV13_11910)	comGB	2471421..2472458 (-)	1038	WP_032866436.1	competence type IV pilus assembly protein ComGB	Machinery gene
KIV13_RS11915 (KIV13_11915)	comGA	2472445..2473515 (-)	1071	WP_012117985.1	competence type IV pilus ATPase ComGA	Machinery gene
KIV13_RS11920 (KIV13_11920)	-	2473707..2474657 (-)	951	WP_015417820.1	magnesium transporter CorA family protein	-
KIV13_RS11925 (KIV13_11925)	-	2474803..2476104 (+)	1302	WP_032866438.1	hemolysin family protein	-
KIV13_RS11930 (KIV13_11930)	-	2476142..2476972 (-)	831	WP_015240214.1	STAS domain-containing protein	-
KIV13_RS11940 (KIV13_11940)	-	2477179..2477559 (-)	381	WP_003153079.1	Spx/MgsR family RNA polymerase-binding regulatory protein	-
KIV13_RS11945 (KIV13_11945)	-	2477796..2478041 (+)	246	WP_003153078.1	DUF2626 domain-containing protein	-

Sequence

Protein

Download Length: 356 a.a. Molecular weight: 40557.86 Da Isoelectric Point: 9.4784

                                >NTDB_id=567557 KIV13_RS11915 WP_012117985.1 2472445..2473515(-) (comGA) [Bacillus velezensis strain YYC]

MKNIETYSRNIINEAYTARASDIHIVPRERDAFIHFRIGHALVKKRVLKKEECVRLISHFKFLSAMDIGERRKPQNGSLS

LPLPTETVHLRMSTLPTMNDESLVIRLLPKRQIPPLDKLSLFRGAGAALLSFLKHSHGLLLFTGPTGSGKTTTLYSLVNY

AKRHFNRRIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLSSLH

TRDAKGAIYRLLEFGVNMTEIEQTVIAIAAQRLVDLTCPFCKEENCSVYCRMYRQTRRAGIYELLYGKNLTQCFQEAKGE

HANFQYQTLRRLIRKGIALGYVTTDNYDRWVYHEAD

Nucleotide

Download Length: 1071 bp

                                >NTDB_id=567557 KIV13_RS11915 WP_012117985.1 2472445..2473515(-) (comGA) [Bacillus velezensis strain YYC]

GTGAAAAATATAGAAACATACAGCAGGAACATCATAAACGAGGCCTATACGGCAAGGGCTTCAGATATACACATTGTGCC

GAGAGAAAGGGATGCTTTCATTCATTTTCGCATCGGCCATGCTCTTGTGAAAAAAAGAGTCTTAAAAAAAGAGGAATGCG

TAAGGCTAATTTCTCATTTTAAGTTTTTATCGGCCATGGATATAGGAGAAAGACGTAAGCCGCAAAACGGGTCATTGTCT

CTGCCGCTTCCGACGGAAACCGTTCATTTGAGAATGTCAACCCTGCCGACAATGAATGATGAAAGTCTTGTCATCAGGCT

TTTGCCTAAGCGGCAGATTCCCCCTCTGGATAAACTGTCCTTATTTCGGGGGGCGGGCGCCGCACTATTGTCCTTTCTGA

AGCATTCGCACGGCCTGCTTCTGTTTACCGGCCCCACCGGATCTGGAAAAACGACCACTCTTTACTCGCTTGTCAACTAT

GCAAAAAGGCATTTCAACCGGCGTATTGTCACGCTTGAAGACCCCGTAGAAACAAGAGATGAGGATGTGTTGCAAGTTCA

GGTGAATGAAAAAGCCGGAGTCACATATTCCGCCGGTTTAAAAGCGATTTTAAGACATGATCCCGATATGATCATCTTAG

GGGAAATCAGGGATGCCGAGACGGCTGAAATCGCAGTCCGCGCGGCCATGACGGGACACCTCGTTCTTTCAAGCCTGCAT

ACAAGAGATGCTAAGGGCGCCATATACAGGCTGCTGGAGTTCGGCGTGAACATGACAGAAATTGAACAAACCGTCATTGC

CATTGCCGCTCAGCGTCTGGTTGATTTAACATGTCCGTTCTGCAAAGAGGAAAACTGTTCCGTGTACTGCCGGATGTACA

GGCAGACACGCCGTGCGGGCATTTATGAACTGCTCTACGGGAAAAACCTCACCCAATGCTTTCAGGAAGCAAAGGGAGAG

CACGCCAATTTTCAATATCAGACGCTCCGCAGGCTGATCAGAAAAGGAATCGCGCTCGGCTATGTCACGACCGACAATTA

CGATCGGTGGGTGTATCATGAAGCGGATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A411A7V3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
comGA	Bacillus subtilis subsp. subtilis str. 168	82.303	100	0.823
pilB	Glaesserella parasuis strain SC1401	38.793	97.753	0.379
pilF	Thermus thermophilus HB27	37.892	98.596	0.374

Detailed information NTG0567557