Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KH277_RS19160 Genome accession   NZ_CP075054
Coordinates   3888366..3888656 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX20     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3883366..3893656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH277_RS19145 (KH277_19135) - 3883589..3884914 (-) 1326 WP_213390822.1 G5 and 3D domain-containing protein -
  KH277_RS19150 (KH277_19140) - 3885049..3885816 (-) 768 WP_004264700.1 TatD family hydrolase -
  KH277_RS19155 (KH277_19145) metG 3885892..3887883 (-) 1992 WP_044052728.1 methionine--tRNA ligase -
  KH277_RS19160 (KH277_19150) abrB 3888366..3888656 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  KH277_RS19165 (KH277_19155) rsmI 3888706..3889587 (-) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  KH277_RS19170 (KH277_19160) - 3889562..3889861 (-) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  KH277_RS19175 (KH277_19165) - 3889848..3890591 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  KH277_RS19180 (KH277_19170) yabA 3890652..3891011 (-) 360 WP_004264720.1 replication initiation-control protein YabA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=567510 KH277_RS19160 WP_169510469.1 3888366..3888656(+) (abrB) [Bacillus velezensis strain VTX20]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=567510 KH277_RS19160 WP_169510469.1 3888366..3888656(+) (abrB) [Bacillus velezensis strain VTX20]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979