Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KIV12_RS06915 Genome accession   NZ_CP075052
Coordinates   1413835..1414476 (+) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1408835..1419476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS06890 (KIV12_06890) - 1409224..1409577 (-) 354 WP_017367963.1 hypothetical protein -
  KIV12_RS06895 (KIV12_06895) degQ 1410083..1410223 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  KIV12_RS06900 (KIV12_06900) - 1410375..1411298 (+) 924 WP_217967871.1 polyprenyl synthetase family protein -
  KIV12_RS06905 (KIV12_06905) comX 1411276..1411449 (+) 174 WP_135009732.1 competence pheromone ComX -
  KIV12_RS06910 (KIV12_06910) comP 1411463..1413754 (+) 2292 WP_135009734.1 ATP-binding protein Regulator
  KIV12_RS06915 (KIV12_06915) comA 1413835..1414476 (+) 642 WP_007500477.1 response regulator transcription factor Regulator
  KIV12_RS06920 (KIV12_06920) - 1414500..1414889 (+) 390 WP_017358943.1 hotdog fold thioesterase -
  KIV12_RS06925 (KIV12_06925) mnhG 1414980..1415354 (-) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  KIV12_RS06930 (KIV12_06930) - 1415338..1415619 (-) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  KIV12_RS06935 (KIV12_06935) - 1415619..1416098 (-) 480 WP_008345848.1 Na+/H+ antiporter subunit E -
  KIV12_RS06940 (KIV12_06940) - 1416105..1417583 (-) 1479 WP_217967872.1 Na+/H+ antiporter subunit D -
  KIV12_RS06945 (KIV12_06945) - 1417576..1417917 (-) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  KIV12_RS06950 (KIV12_06950) - 1417917..1418348 (-) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=567397 KIV12_RS06915 WP_007500477.1 1413835..1414476(+) (comA) [Bacillus altitudinis strain LZP 02]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=567397 KIV12_RS06915 WP_007500477.1 1413835..1414476(+) (comA) [Bacillus altitudinis strain LZP 02]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAGAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGCTAACAGAGCGTGAATGTTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718