Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KIV12_RS05260 Genome accession   NZ_CP075052
Coordinates   1090919..1092298 (+) Length   459 a.a.
NCBI ID   WP_217967788.1    Uniprot ID   -
Organism   Bacillus altitudinis strain LZP 02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1085919..1097298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIV12_RS05240 (KIV12_05240) - 1086926..1087594 (-) 669 WP_017357860.1 YigZ family protein -
  KIV12_RS05245 (KIV12_05245) degS 1087816..1088991 (+) 1176 WP_217967787.1 sensor histidine kinase Regulator
  KIV12_RS05250 (KIV12_05250) degU 1089056..1089746 (+) 691 Protein_1009 two-component system response regulator DegU -
  KIV12_RS05255 (KIV12_05255) - 1089957..1090799 (+) 843 WP_024719242.1 DegV family protein -
  KIV12_RS05260 (KIV12_05260) comFA 1090919..1092298 (+) 1380 WP_217967788.1 DEAD/DEAH box helicase Machinery gene
  KIV12_RS05265 (KIV12_05265) - 1092363..1092656 (+) 294 WP_217967789.1 late competence development ComFB family protein -
  KIV12_RS05270 (KIV12_05270) comFC 1092653..1093339 (+) 687 WP_217967790.1 ComF family protein Machinery gene
  KIV12_RS05275 (KIV12_05275) - 1093396..1093815 (+) 420 WP_017357864.1 TIGR03826 family flagellar region protein -
  KIV12_RS05280 (KIV12_05280) flgM 1093895..1094158 (+) 264 WP_003213252.1 flagellar biosynthesis anti-sigma factor FlgM -
  KIV12_RS05285 (KIV12_05285) - 1094177..1094659 (+) 483 WP_007499977.1 flagellar protein FlgN -
  KIV12_RS05290 (KIV12_05290) flgK 1094675..1096195 (+) 1521 WP_058336981.1 flagellar hook-associated protein FlgK -
  KIV12_RS05295 (KIV12_05295) flgL 1096204..1097115 (+) 912 WP_008348257.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52597.23 Da        Isoelectric Point: 9.9420

>NTDB_id=567390 KIV12_RS05260 WP_217967788.1 1090919..1092298(+) (comFA) [Bacillus altitudinis strain LZP 02]
MNLEKAMELSHKLQSRHLLPIECQCTQSELEWLENQGFIHRTPAVDRVSSGLICCRCGVSNKRYFALSPCETCKKDCVYC
RSCIMLGKVSECGFLYEWTGPQKKETRRVELTWQGELSKGQKRASDRLVEAIQNKFDLLVWAVCGAGKTEVLFHGIKYAL
NNGMSVCIATPRTDVVLELEPRMRKAFQGLNIAALYGGSSQRFQMAPLMIATTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKSMKKTGVRIYLSATPSKKMQKDVAYRQLEAIKIPLRFHQKPLPVPTFQWVGDWKKKLKRNRLPASTMNWLHE
HITKKKRVLLFVPSIFTMKKVTHILQGQDVNVQGVSADDQERKQKVQHFRDHRYDVLVTTTILERGVTIQDVQVGVLGAE
SPIFSESALVQISGRAGRHPDFFNGDVYFFHFGLTRSMKQAKKHIVKMNNTAEKEFSEK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=567390 KIV12_RS05260 WP_217967788.1 1090919..1092298(+) (comFA) [Bacillus altitudinis strain LZP 02]
TTGAATCTGGAAAAAGCAATGGAACTCAGTCACAAGCTACAATCAAGGCACCTTCTTCCTATTGAATGTCAATGTACACA
GTCCGAATTGGAGTGGCTGGAGAATCAAGGATTCATCCATAGAACACCTGCTGTCGATAGGGTGTCGAGTGGTTTGATCT
GCTGCCGGTGCGGTGTATCAAACAAGCGCTACTTTGCCCTCTCTCCGTGTGAAACATGTAAAAAAGACTGTGTATACTGT
AGATCCTGCATCATGCTGGGAAAAGTAAGCGAATGTGGCTTTCTCTACGAATGGACGGGTCCACAAAAGAAAGAAACAAG
ACGAGTTGAATTAACATGGCAGGGAGAGCTTTCTAAAGGGCAAAAGAGAGCGTCCGATAGGCTAGTAGAAGCAATCCAAA
ACAAATTTGATCTGCTCGTTTGGGCTGTTTGTGGTGCGGGGAAAACGGAGGTGCTTTTTCATGGTATAAAATATGCGCTA
AATAACGGAATGAGTGTTTGTATTGCGACGCCTAGAACCGATGTTGTACTTGAGCTCGAACCTCGAATGAGAAAGGCATT
TCAAGGACTGAATATAGCTGCACTTTATGGCGGGAGTTCTCAAAGGTTTCAAATGGCACCGCTTATGATCGCTACAACCC
ATCAGCTAATGAGATATAAAAACGCCTTTGATGTCCTCATTGTAGACGAAGTCGATGCTTTTCCTTATTCAATGGATGAA
CGGCTTCAGTTTGCTGTTTTAAAATCAATGAAAAAAACAGGAGTTAGAATTTACTTAAGTGCCACACCATCTAAAAAAAT
GCAAAAGGATGTTGCTTATAGACAATTAGAAGCGATCAAAATTCCTCTGCGCTTCCACCAAAAACCGTTGCCTGTCCCAA
CATTTCAATGGGTTGGAGATTGGAAAAAGAAATTAAAAAGAAATCGGCTTCCAGCATCTACAATGAACTGGCTGCATGAA
CATATCACAAAGAAAAAAAGAGTGTTACTCTTTGTTCCTTCTATTTTTACTATGAAGAAGGTAACTCATATTCTTCAAGG
TCAAGATGTAAATGTACAGGGTGTTTCTGCGGATGATCAAGAAAGGAAGCAAAAAGTCCAGCATTTCAGAGATCATAGAT
ACGATGTATTGGTTACAACAACTATTCTAGAAAGAGGCGTTACCATTCAAGATGTTCAGGTGGGCGTATTAGGTGCGGAA
TCTCCTATTTTTTCAGAAAGTGCACTTGTCCAAATTTCTGGTAGAGCAGGGAGACATCCAGATTTTTTTAACGGAGACGT
ATACTTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAACATATCGTAAAAATGAATAATACAGCTGAAA
AAGAGTTTTCTGAAAAATAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-264)

Helicase conserved C-terminal domain (Helicase_C)

(320-419)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.902

97.386

0.505