Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPOK310_RS07250 Genome accession   NC_020509
Coordinates   1495128..1495412 (-) Length   94 a.a.
NCBI ID   WP_000736106.1    Uniprot ID   T0F3N0
Organism   Helicobacter pylori OK310     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1490128..1500412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPOK310_RS07225 (HPOK310_1393) - 1490739..1491908 (-) 1170 WP_015429547.1 VirB8/TrbF family protein -
  HPOK310_RS07230 (HPOK310_1394) - 1491901..1492035 (-) 135 WP_015429548.1 hypothetical protein -
  HPOK310_RS07235 (HPOK310_1395) - 1492032..1494607 (-) 2576 Protein_1408 VirB4 family type IV secretion/conjugal transfer ATPase -
  HPOK310_RS07240 (HPOK310_1397) - 1494607..1494843 (-) 237 WP_001183709.1 hypothetical protein -
  HPOK310_RS07245 (HPOK310_1398) comB3 1494854..1495117 (-) 264 WP_015429551.1 hypothetical protein Machinery gene
  HPOK310_RS07250 (HPOK310_1399) comB2 1495128..1495412 (-) 285 WP_000736106.1 TrbC/VirB2 family protein Machinery gene
  HPOK310_RS07255 (HPOK310_1400) - 1495409..1495888 (-) 480 WP_015429552.1 hypothetical protein -
  HPOK310_RS07260 (HPOK310_1401) - 1495992..1496780 (-) 789 WP_015429553.1 hypothetical protein -
  HPOK310_RS07265 (HPOK310_1402) - 1496831..1497333 (-) 503 Protein_1414 hypothetical protein -
  HPOK310_RS07270 (HPOK310_1403) - 1497396..1500311 (-) 2916 WP_015429555.1 type III restriction-modification system endonuclease -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10752.11 Da        Isoelectric Point: 11.1589

>NTDB_id=56655 HPOK310_RS07250 WP_000736106.1 1495128..1495412(-) (comB2) [Helicobacter pylori OK310]
MKKLRHFRKLIAFLGFSPLLLQADMTTFFNSIEQQLTSPTAKGILMVIFLGLAIFIWKNLDRWKEILMTVLAIAIGAAIF
FKAPALANWFMSIF

Nucleotide


Download         Length: 285 bp        

>NTDB_id=56655 HPOK310_RS07250 WP_000736106.1 1495128..1495412(-) (comB2) [Helicobacter pylori OK310]
ATGAAAAAATTAAGGCATTTTAGAAAGCTCATCGCCTTTTTAGGTTTTTCACCACTTTTACTACAAGCGGATATGACTAC
CTTTTTTAATAGTATTGAACAACAACTCACTAGCCCCACCGCTAAGGGTATTTTGATGGTCATTTTTTTAGGGCTTGCTA
TTTTTATATGGAAAAATTTAGACAGATGGAAAGAAATCTTAATGACAGTCCTTGCTATTGCCATAGGCGCTGCAATCTTT
TTTAAAGCCCCAGCCTTAGCTAATTGGTTTATGAGTATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(4-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0F3N0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

57.778

95.745

0.553

Multiple sequence alignment