Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KH263_RS11900 Genome accession   NZ_CP074685
Coordinates   2510693..2511028 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain VTX9     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2505693..2516028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH263_RS11880 (KH263_11880) gcvT 2506303..2507403 (-) 1101 WP_213403482.1 glycine cleavage system aminomethyltransferase GcvT -
  KH263_RS11885 (KH263_11885) - 2507827..2509497 (+) 1671 WP_213403484.1 SNF2-related protein -
  KH263_RS11890 (KH263_11890) - 2509515..2510309 (+) 795 WP_003153106.1 YqhG family protein -
  KH263_RS11895 (KH263_11895) sinI 2510486..2510659 (+) 174 WP_003153105.1 anti-repressor SinI family protein Regulator
  KH263_RS11900 (KH263_11900) sinR 2510693..2511028 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KH263_RS11905 (KH263_11905) - 2511076..2511861 (-) 786 WP_015388008.1 TasA family protein -
  KH263_RS11910 (KH263_11910) - 2511925..2512509 (-) 585 WP_012117977.1 signal peptidase I -
  KH263_RS11915 (KH263_11915) tapA 2512481..2513152 (-) 672 WP_165625718.1 amyloid fiber anchoring/assembly protein TapA -
  KH263_RS11920 (KH263_11920) - 2513411..2513740 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  KH263_RS11925 (KH263_11925) - 2513780..2513959 (-) 180 WP_003153093.1 YqzE family protein -
  KH263_RS11930 (KH263_11930) comGG 2514016..2514393 (-) 378 WP_003153092.1 competence type IV pilus minor pilin ComGG Machinery gene
  KH263_RS11935 (KH263_11935) comGF 2514394..2514789 (-) 396 WP_003153090.1 competence type IV pilus minor pilin ComGF -
  KH263_RS11940 (KH263_11940) comGE 2514803..2515117 (-) 315 WP_003153089.1 competence type IV pilus minor pilin ComGE -
  KH263_RS11945 (KH263_11945) comGD 2515101..2515538 (-) 438 WP_003153088.1 competence type IV pilus minor pilin ComGD Machinery gene
  KH263_RS11950 (KH263_11950) comGC 2515528..2515794 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=565731 KH263_RS11900 WP_003153104.1 2510693..2511028(+) (sinR) [Bacillus velezensis strain VTX9]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=565731 KH263_RS11900 WP_003153104.1 2510693..2511028(+) (sinR) [Bacillus velezensis strain VTX9]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991