Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KH389_RS19390 Genome accession   NZ_CP074676
Coordinates   4271029..4273251 (-) Length   740 a.a.
NCBI ID   WP_213606053.1    Uniprot ID   -
Organism   Pseudomonas qingdaonensis strain S-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4266029..4278251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH389_RS19355 (KH389_19355) murB 4266429..4267448 (-) 1020 WP_043862886.1 UDP-N-acetylmuramate dehydrogenase -
  KH389_RS19360 (KH389_19360) - 4267445..4267909 (-) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  KH389_RS19365 (KH389_19365) kdsB 4267909..4268673 (-) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KH389_RS19370 (KH389_19370) - 4268670..4268855 (-) 186 WP_003247142.1 Trm112 family protein -
  KH389_RS19375 (KH389_19375) lpxK 4268893..4269903 (-) 1011 WP_043862889.1 tetraacyldisaccharide 4'-kinase -
  KH389_RS19380 (KH389_19380) - 4269903..4270334 (-) 432 WP_054915817.1 ExbD/TolR family protein -
  KH389_RS19385 (KH389_19385) exbB 4270331..4270966 (-) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KH389_RS19390 (KH389_19390) comA 4271029..4273251 (-) 2223 WP_213606053.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KH389_RS19395 (KH389_19395) - 4273392..4273931 (+) 540 WP_043862892.1 DUF2062 domain-containing protein -
  KH389_RS19400 (KH389_19400) - 4273899..4274678 (-) 780 WP_058541067.1 ABC transporter permease -
  KH389_RS19405 (KH389_19405) - 4274675..4275607 (-) 933 WP_043862894.1 ABC transporter ATP-binding protein -
  KH389_RS19410 (KH389_19410) - 4275752..4276375 (-) 624 WP_100634415.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 79798.18 Da        Isoelectric Point: 10.6388

>NTDB_id=565635 KH389_RS19390 WP_213606053.1 4271029..4273251(-) (comA) [Pseudomonas qingdaonensis strain S-1]
MRTRMLALALGLLALNVLPALPSVGWLWGIGMTGMLCLVCRWAVPGLFLLGFAWACCSAQWALDDRLRPELEGRTLWLEG
RVVGLAQQGAHSVRFELAEASSRRAQLPQRLSLSWFGGPPVNSGERWRLAVQLQRPSGLLNPHGPDQEAAMLARRIGATG
RVRAGERLAPASHAWRDSVRQRLLVAQAHGREGALAALVLGDGGALAQEDWQVLQATGTVHLLVISGQHIGLLAGLVYGL
VAGLARVGAWPRALPWLPWACGLAFAAALAYGLMAGFQVPVRRACIMLAVVLLWRLRFRHLGAWIPLLLALNGVLLVEPL
ASLQPGFWLSFAAVAVLVYVFGGRLGAWNPWLAWCRAQWLIAIGLLPVLLALGLPISLSAPLANLVAVPWVSIAVLPLAL
AGTLLQGLPLLGEALLWLAGGSLAALFWTLAQVAHWQPAWTPVALPIWAWLMVGGGTVLLLLPGGLPMRVLGWPLLLLAG
CAPRNEIAHGQLEVWQLDVGQGQAFVLRTRHHATLYDAGPATRGSDLGERVVVPTLRKLGVRELDLALISHAHADHAGGA
LAVQRSVPLVRVVGGDPDELPGQLQAQACASGEQWQWDGVLFSLWRWQQAGDSNQRSCVLHVDAGGETLLLTGDIDAQAE
RAWLRESTAGPVDWLQAPHHGSRTSSSQAFLERTRPRGVLISRGRHNAFGHPHAQVMARYQALGITVHDSALHGAVRLVL
GSFGQAVGQRSQRRFWREPT

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=565635 KH389_RS19390 WP_213606053.1 4271029..4273251(-) (comA) [Pseudomonas qingdaonensis strain S-1]
ATGCGCACAAGGATGTTGGCGCTGGCCTTGGGGCTGTTGGCGCTCAACGTGCTACCTGCCTTGCCGTCGGTCGGCTGGCT
CTGGGGCATCGGCATGACGGGAATGTTATGCCTGGTGTGTCGATGGGCAGTGCCCGGTCTGTTCCTGCTTGGTTTTGCCT
GGGCCTGTTGCTCGGCGCAATGGGCGCTGGACGATCGACTGCGGCCCGAGCTGGAGGGGCGCACCCTGTGGCTGGAAGGT
CGGGTAGTGGGCCTGGCGCAGCAGGGCGCACATTCGGTGCGTTTCGAGCTGGCCGAAGCCTCCTCGCGCCGCGCCCAGTT
GCCGCAGCGGCTGAGCCTGAGCTGGTTTGGCGGGCCGCCGGTCAACAGTGGCGAGCGTTGGCGCCTGGCGGTACAGCTGC
AGCGCCCCTCCGGCCTGCTCAACCCCCATGGGCCTGACCAGGAAGCCGCCATGCTGGCCCGGCGAATCGGTGCCACCGGC
CGTGTAAGGGCAGGTGAACGACTGGCCCCGGCCAGCCATGCGTGGCGTGATTCGGTGCGCCAACGCCTGCTCGTGGCTCA
GGCCCATGGGCGCGAAGGTGCGCTGGCGGCGCTGGTGCTGGGTGACGGCGGGGCGCTGGCACAGGAGGACTGGCAGGTGC
TCCAGGCAACCGGCACGGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTGGCCGGTCTGGTGTACGGCCTG
GTGGCCGGGTTGGCACGTGTGGGGGCATGGCCCAGGGCGCTGCCCTGGCTACCCTGGGCGTGCGGCCTGGCGTTTGCGGC
GGCCCTGGCGTACGGCTTGATGGCGGGCTTTCAGGTACCGGTACGACGCGCCTGCATCATGCTGGCGGTGGTGCTGTTGT
GGCGCCTGCGTTTTCGCCACCTTGGGGCCTGGATTCCCTTGCTGCTTGCCCTCAACGGTGTATTGCTGGTGGAACCATTG
GCCAGCCTGCAGCCGGGGTTCTGGCTGTCGTTCGCAGCGGTGGCGGTGCTGGTGTATGTGTTCGGCGGCCGGCTGGGGGC
CTGGAACCCCTGGCTGGCATGGTGCCGGGCCCAATGGCTGATCGCGATCGGCCTGTTGCCGGTGCTGCTGGCGCTGGGGC
TGCCGATCAGTCTCTCGGCACCGCTGGCCAATCTGGTTGCGGTGCCTTGGGTCAGTATCGCAGTGTTGCCCCTGGCGCTG
GCCGGCACACTGCTGCAGGGGCTCCCGTTGCTGGGGGAGGCCCTGTTGTGGCTGGCTGGAGGTTCGCTGGCAGCCTTGTT
CTGGACACTGGCACAGGTGGCGCATTGGCAACCGGCCTGGACACCGGTCGCCTTGCCGATATGGGCATGGTTGATGGTGG
GCGGTGGCACGGTACTGCTGTTGTTGCCGGGCGGGCTGCCGATGCGGGTGCTGGGCTGGCCCTTGCTGCTGCTGGCCGGC
TGTGCGCCTCGCAACGAGATCGCCCATGGGCAACTGGAGGTGTGGCAGCTGGATGTCGGCCAGGGCCAGGCATTTGTGCT
GCGTACCCGTCACCATGCGACGCTGTATGACGCAGGCCCGGCCACCCGTGGCAGCGACCTGGGGGAGCGGGTGGTCGTGC
CGACTCTGCGCAAGCTGGGGGTGCGCGAGCTGGACCTGGCGCTGATCAGCCATGCCCATGCCGACCATGCCGGCGGCGCC
CTGGCGGTGCAGCGCAGCGTGCCGCTGGTGCGCGTGGTGGGCGGCGACCCGGATGAGCTGCCCGGGCAACTGCAGGCCCA
GGCCTGCGCCAGTGGCGAGCAATGGCAGTGGGATGGCGTGCTCTTCAGCCTGTGGCGCTGGCAGCAGGCCGGCGACAGCA
ATCAGCGCTCCTGTGTGTTGCACGTGGATGCCGGCGGGGAAACCCTGCTGCTGACCGGTGACATCGATGCCCAGGCCGAG
CGCGCCTGGCTGCGCGAGTCGACAGCCGGCCCGGTCGACTGGTTGCAGGCGCCCCATCATGGCAGCCGCACCTCGTCGAG
CCAGGCCTTTCTCGAACGAACCCGGCCCCGGGGCGTGCTGATTTCGCGAGGGCGCCACAATGCATTCGGGCATCCGCACG
CACAGGTGATGGCGCGTTACCAGGCGCTGGGTATCACCGTGCACGACAGCGCCCTGCACGGGGCGGTGCGCCTGGTGCTG
GGCAGCTTTGGCCAGGCGGTCGGGCAACGCAGCCAGCGCCGCTTCTGGCGGGAGCCGACATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Competence protein (Competence)

(198-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

97.162

0.585
  comA Ralstonia pseudosolanacearum GMI1000

34.184

100

0.362