Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KH389_RS19385 Genome accession   NZ_CP074676
Coordinates   4270331..4270966 (-) Length   211 a.a.
NCBI ID   WP_162484877.1    Uniprot ID   -
Organism   Pseudomonas qingdaonensis strain S-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4265331..4275966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KH389_RS19355 (KH389_19355) murB 4266429..4267448 (-) 1020 WP_043862886.1 UDP-N-acetylmuramate dehydrogenase -
  KH389_RS19360 (KH389_19360) - 4267445..4267909 (-) 465 WP_054915815.1 low molecular weight protein-tyrosine-phosphatase -
  KH389_RS19365 (KH389_19365) kdsB 4267909..4268673 (-) 765 WP_043862888.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KH389_RS19370 (KH389_19370) - 4268670..4268855 (-) 186 WP_003247142.1 Trm112 family protein -
  KH389_RS19375 (KH389_19375) lpxK 4268893..4269903 (-) 1011 WP_043862889.1 tetraacyldisaccharide 4'-kinase -
  KH389_RS19380 (KH389_19380) - 4269903..4270334 (-) 432 WP_054915817.1 ExbD/TolR family protein -
  KH389_RS19385 (KH389_19385) exbB 4270331..4270966 (-) 636 WP_162484877.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KH389_RS19390 (KH389_19390) comA 4271029..4273251 (-) 2223 WP_213606053.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KH389_RS19395 (KH389_19395) - 4273392..4273931 (+) 540 WP_043862892.1 DUF2062 domain-containing protein -
  KH389_RS19400 (KH389_19400) - 4273899..4274678 (-) 780 WP_058541067.1 ABC transporter permease -
  KH389_RS19405 (KH389_19405) - 4274675..4275607 (-) 933 WP_043862894.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22901.00 Da        Isoelectric Point: 7.3618

>NTDB_id=565634 KH389_RS19385 WP_162484877.1 4270331..4270966(-) (exbB) [Pseudomonas qingdaonensis strain S-1]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPPHLLGQVWRWIKDKQLTSEKLKTLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=565634 KH389_RS19385 WP_162484877.1 4270331..4270966(-) (exbB) [Pseudomonas qingdaonensis strain S-1]
GTGTGGGAATTGGTCAAGTCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCTGCCATGGCTATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGTGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTCACCAGCGAGAAGCTCAAGACCCTGCGCGCCGACTCGCCGCTGGGCGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCCGCCATGGTCGCGAAATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGTGTCATCCACGAGCTGGAGCGCTACAT
CAACGCACTGGGCACTATCGCGGCCATGGCGCCGCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCA
GTGCCTTCACCGGGTCCGGCATGACCACCAATGCCTCGGTATTGGCGGGGGGGATCTCCAAGGCGTTGATCACCACCGCA
GCCGGCCTGATGGTGGGTATCCCGGCAGTATTCTTCCATCGTTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCCATCAAGCTGGTGGAAGTGGTCCAGGGGGACCGTGATGTCGACCTGAGCGAGGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858