Detailed information NTG0565397

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KIJ28_RS03780
• Genome accession: NZ_CP074578
• Coordinates: 850970..851842 (-)
• Length: 290 a.a.
• NCBI ID: WP_213631566.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain Susan2139
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 845970..856842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KIJ28_RS03750 (KIJ28_03750)	-	846754..848052 (-)	1299	WP_003392712.1	NAD(P)/FAD-dependent oxidoreductase	-
KIJ28_RS26305	-	848148..848384 (-)	237	WP_327397062.1	DUF3094 family protein	-
KIJ28_RS03755 (KIJ28_03755)	-	848269..848802 (-)	534	WP_213568008.1	MOSC domain-containing protein	-
KIJ28_RS03760 (KIJ28_03760)	-	848799..849428 (-)	630	WP_003345130.1	DUF1780 domain-containing protein	-
KIJ28_RS03765 (KIJ28_03765)	-	849556..850017 (+)	462	WP_213568009.1	hypothetical protein	-
KIJ28_RS03770 (KIJ28_03770)	yacG	850144..850353 (-)	210	WP_002552020.1	DNA gyrase inhibitor YacG	-
KIJ28_RS03775 (KIJ28_03775)	coaE	850350..850973 (-)	624	WP_024648208.1	dephospho-CoA kinase	-
KIJ28_RS03780 (KIJ28_03780)	pilD	850970..851842 (-)	873	WP_213631566.1	A24 family peptidase	Machinery gene
KIJ28_RS03785 (KIJ28_03785)	pilC	851844..853061 (-)	1218	WP_024648206.1	type II secretion system F family protein	Machinery gene
KIJ28_RS03790 (KIJ28_03790)	pilB	853064..854758 (-)	1695	WP_024648205.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KIJ28_RS03795 (KIJ28_03795)	pilA2	854984..855409 (+)	426	WP_003392698.1	pilin	Machinery gene
KIJ28_RS26310	-	855549..855720 (+)	172	Protein_749	DUF433 domain-containing protein	-
KIJ28_RS03800 (KIJ28_03800)	-	855768..856313 (-)	546	WP_003345116.1	DUF1523 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31975.17 Da
• Isoelectric Point: 8.3734

>NTDB_id=565397 KIJ28_RS03780 WP_213631566.1 850970..851842(-) (pilD) [Pseudomonas syringae strain Susan2139]
MPLLDLLASSPLAFVTTCCILGLIIGSFLNVVVYRLPIMMERDWKAQSRELLGLPAEPDQPVLNLNRPRSSCPHCAHKIR
PWENLPVISYLLLRGKCSQCKAPISKRYPLVELTCAVLSAYVAWHFGFGWQAAAMLVLSWGLLAMSLIDADHQLLPDSLV
LPLLWLGLIVNAFGLFTSLNDALWGAVAGYLALWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGVIMMRVRRVESGTPIPFGPYLAIAGWIALLWGGQITDSYMQFAGFR

Nucleotide

• Length: 873 bp

>NTDB_id=565397 KIJ28_RS03780 WP_213631566.1 850970..851842(-) (pilD) [Pseudomonas syringae strain Susan2139]
ATGCCCCTCCTCGACCTACTGGCCAGCTCCCCCCTGGCCTTCGTCACCACCTGCTGCATTCTCGGCCTGATCATCGGAAG
CTTCCTCAACGTGGTCGTCTACCGCCTCCCGATAATGATGGAGCGCGACTGGAAAGCCCAATCCAGAGAACTGCTCGGCC
TGCCCGCCGAACCCGATCAACCCGTCTTAAACCTGAACCGACCCCGTTCCAGCTGCCCGCATTGCGCTCACAAAATCCGC
CCGTGGGAGAACCTGCCGGTGATCAGCTATCTGCTGCTGCGCGGCAAATGCTCGCAGTGCAAAGCGCCGATCAGCAAACG
CTACCCGCTGGTCGAGCTGACCTGCGCAGTGCTATCAGCCTACGTGGCCTGGCATTTCGGCTTTGGCTGGCAGGCGGCGG
CAATGCTGGTACTGAGCTGGGGGCTGCTGGCGATGAGTCTGATAGATGCTGATCACCAGCTGTTACCTGATTCTCTGGTG
CTGCCACTGCTGTGGCTGGGCCTGATCGTTAACGCTTTCGGGCTGTTCACCTCGCTGAACGATGCGCTGTGGGGTGCAGT
GGCCGGGTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGTAAGGAAGGCATGGGTTATGGCGACT
TCAAGTTGCTGGCCATGCTGGGCGCGTGGGGCGGCTGGCAGATTTTGCCGCTGACCATCCTGTTATCGTCGCTGGTGGGC
GCGGTGCTCGGGGTGATCATGATGCGTGTGCGCAGGGTCGAAAGCGGTACGCCGATCCCCTTTGGTCCTTATCTGGCCAT
TGCGGGGTGGATCGCTTTGCTCTGGGGTGGTCAAATAACCGACTCTTACATGCAGTTTGCCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.71	97.586	0.524
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter baumannii D1279779	52.92	94.483	0.5
pilD	Acinetobacter nosocomialis M2	52.19	94.483	0.493
pilD	Neisseria gonorrhoeae MS11	51.119	92.414	0.472