Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KHQ31_RS03665 Genome accession   NZ_CP074441
Coordinates   720915..721385 (-) Length   156 a.a.
NCBI ID   WP_213409638.1    Uniprot ID   -
Organism   Weissella ceti strain CECT 7719     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 715915..726385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHQ31_RS03625 (KHQ31_03625) - 716464..717264 (-) 801 WP_213409631.1 prohibitin family protein -
  KHQ31_RS03630 (KHQ31_03630) - 717284..717904 (-) 621 WP_213409632.1 DUF3310 domain-containing protein -
  KHQ31_RS03635 (KHQ31_03635) - 717931..718281 (-) 351 WP_213409633.1 hypothetical protein -
  KHQ31_RS03640 (KHQ31_03640) - 718274..718423 (-) 150 WP_213409634.1 hypothetical protein -
  KHQ31_RS03645 (KHQ31_03645) - 718416..718793 (-) 378 WP_264336072.1 RusA family crossover junction endodeoxyribonuclease -
  KHQ31_RS03650 (KHQ31_03650) - 718786..719058 (-) 273 WP_213409635.1 hypothetical protein -
  KHQ31_RS03655 (KHQ31_03655) - 719234..720064 (-) 831 WP_213409636.1 ATP-binding protein -
  KHQ31_RS03660 (KHQ31_03660) - 720064..720897 (-) 834 WP_213409637.1 phage replisome organizer N-terminal domain-containing protein -
  KHQ31_RS03665 (KHQ31_03665) ssb 720915..721385 (-) 471 WP_213409638.1 single-stranded DNA-binding protein Machinery gene
  KHQ31_RS03670 (KHQ31_03670) - 721397..722215 (-) 819 WP_213409639.1 PD-(D/E)XK nuclease-like domain-containing protein -
  KHQ31_RS03675 (KHQ31_03675) - 722215..723222 (-) 1008 WP_213409640.1 recombinase RecT -
  KHQ31_RS03680 (KHQ31_03680) - 723526..723780 (-) 255 WP_213409641.1 hypothetical protein -
  KHQ31_RS03685 (KHQ31_03685) - 723795..724208 (-) 414 WP_213409642.1 hypothetical protein -
  KHQ31_RS03690 (KHQ31_03690) - 724309..724488 (-) 180 WP_213409643.1 hypothetical protein -
  KHQ31_RS03695 (KHQ31_03695) - 724485..724643 (-) 159 WP_213409644.1 hypothetical protein -
  KHQ31_RS03700 (KHQ31_03700) - 724830..725027 (-) 198 WP_213409645.1 helix-turn-helix transcriptional regulator -
  KHQ31_RS03705 (KHQ31_03705) - 725014..725289 (-) 276 WP_213409646.1 hypothetical protein -
  KHQ31_RS03710 (KHQ31_03710) - 725430..725714 (-) 285 WP_213409647.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17247.88 Da        Isoelectric Point: 5.0001

>NTDB_id=564934 KHQ31_RS03665 WP_213409638.1 720915..721385(-) (ssb) [Weissella ceti strain CECT 7719]
MINRVVLVGRLTRDTELKYTTSGAAVGTFSLAVNRQFTNSDGEREADFINCVIWRKSAENFANFTSKGSQVAVEGRLQTR
NYENKDGQRVYVTEVIVDNFSLLDSKSSNGENGQKQSKNGFAPSENRSAPLENGRGQSNPFENGRGIDVTDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=564934 KHQ31_RS03665 WP_213409638.1 720915..721385(-) (ssb) [Weissella ceti strain CECT 7719]
ATGATTAATCGAGTTGTATTAGTAGGGCGTTTGACACGCGATACAGAACTGAAATACACGACATCAGGCGCAGCAGTTGG
AACATTTTCATTGGCGGTTAATCGTCAATTTACAAATTCCGACGGAGAGCGTGAAGCAGATTTTATTAACTGTGTTATCT
GGCGTAAGTCAGCAGAAAACTTTGCAAACTTCACTTCGAAGGGATCACAAGTTGCTGTAGAAGGACGACTTCAAACACGT
AATTATGAGAATAAAGACGGTCAACGTGTGTACGTTACTGAAGTGATTGTTGATAATTTCTCATTGTTAGACAGCAAGTC
AAGCAATGGGGAAAACGGACAAAAACAGTCCAAAAACGGTTTTGCCCCGTCGGAAAACCGTTCTGCCCCGTTGGAAAACG
GTCGAGGACAGTCAAACCCGTTCGAAAACGGTCGGGGAATTGATGTGACTGATGACGACCTTCCTTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

65.896

100

0.731
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.744

100

0.571
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.547

67.949

0.391