Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KHW14_RS08175 Genome accession   NZ_CP074412
Coordinates   1837051..1839267 (+) Length   738 a.a.
NCBI ID   WP_122415537.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain U625     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1832051..1844267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW14_RS08150 (KHW14_08150) - 1832667..1833599 (+) 933 WP_004884614.1 ABC transporter ATP-binding protein -
  KHW14_RS08155 (KHW14_08155) - 1833596..1834384 (+) 789 WP_099229982.1 ABC transporter permease -
  KHW14_RS08160 (KHW14_08160) - 1834430..1835320 (-) 891 WP_122415534.1 DUF6708 domain-containing protein -
  KHW14_RS08165 (KHW14_08165) - 1835557..1836459 (-) 903 WP_122415535.1 DUF6708 domain-containing protein -
  KHW14_RS08170 (KHW14_08170) - 1836576..1836821 (-) 246 WP_122415536.1 hypothetical protein -
  KHW14_RS08175 (KHW14_08175) comA 1837051..1839267 (+) 2217 WP_122415537.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHW14_RS08180 (KHW14_08180) exbB 1839300..1840016 (+) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHW14_RS08185 (KHW14_08185) - 1840013..1840444 (+) 432 WP_004884601.1 biopolymer transporter ExbD -
  KHW14_RS08190 (KHW14_08190) lpxK 1840444..1841439 (+) 996 WP_122422618.1 tetraacyldisaccharide 4'-kinase -
  KHW14_RS08195 (KHW14_08195) - 1841457..1841642 (+) 186 WP_004884599.1 Trm112 family protein -
  KHW14_RS08200 (KHW14_08200) kdsB 1841639..1842403 (+) 765 WP_004884598.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHW14_RS08205 (KHW14_08205) murB 1842438..1843457 (+) 1020 WP_122581476.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80252.41 Da        Isoelectric Point: 9.6985

>NTDB_id=564742 KHW14_RS08175 WP_122415537.1 1837051..1839267(+) (comA) [Pseudomonas viridiflava strain U625]
MRTGMIALALGLLALRFLPALPDTWLLLSMPVVALMLLPFRTYPLAFFLFGLTWACLSAQSALDDRLLSRLDGQTLWLQG
KVVGLPSAAEGVVRFELADGVSRRAKLPRLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPEAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAVRQRLLAVDAQGREGGLAALVLGDGSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGVIYAL
VGLLVRWGLWPRTLPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGMTWPLLLSLNAVLVFEPL
VSLQPGFWLSFSAVGILILIFSGRLGAWSWLQSWTRAQWLIAVGLLPILMMLNLPISISGPLANLLAVPWVSVIVLPAAL
IGTLLLPVPIVGEGLLWLAGGALEGLFMFLGWMADLVPAWLPSTTPAWTLVLSLLGALLLLLPRGVPMRPLGWPLLLLCV
FPPLKSVPAGQVDVLQLDVGQGLSILLRTRHHTLLYDTGPRFGEFDIGQRVVVPAIRKSGVRHLDVMLLSHADSDHAGGA
PAVHKAFTVGRVLGGDIERLAPALGALRCENGEQWEWDGVVFSTWIWEQAPEGNAGSCMLSVDAGGERLLLTGDVDAEAE
QAAIDSGFDLRAQWLQAPHHGSRSSSSKPFLRAVMPKGVLISRGRNNAFGHPHPLVMARYKWNGIASYDSAELGAIRLQL
GTYGSPEAQRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=564742 KHW14_RS08175 WP_122415537.1 1837051..1839267(+) (comA) [Pseudomonas viridiflava strain U625]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGCCTGTTGGCCCTGCGCTTCCTGCCTGCCTTGCCCGACACCTGGCTGTT
GCTGTCGATGCCCGTCGTGGCCTTGATGCTGTTGCCTTTTCGCACCTATCCGCTGGCCTTCTTTCTGTTCGGCTTGACCT
GGGCTTGCCTCTCGGCGCAATCGGCACTGGATGATCGATTGTTGTCCCGACTTGACGGCCAGACGCTGTGGCTGCAAGGC
AAGGTGGTGGGGTTACCGAGTGCGGCTGAAGGTGTGGTGCGTTTCGAACTCGCGGATGGTGTGTCACGACGGGCGAAATT
ACCCCGGCTGATGCGCATTGCCTGGTATGGCGGTCCTGAAGTGCGCAGCGGTGAGCGATGGCGACTGGCGGTGAAGCTCA
AGCGGCCGGGCGGGCTGGTCAATCCCGAAGCGTTCGATTACGAGGCTTGGTTATTGGCCCAGCGTATCGGCGCGACCGGC
ACCGTGGTGGACGGTCAGTTGCTGGCGCCGGCGCGTGCTGCCTGGCGCGATGCCGTTCGCCAACGGCTGCTGGCCGTCGA
CGCGCAGGGGCGCGAAGGCGGGCTGGCAGCGCTGGTGCTGGGGGATGGCTCGGGCTTGTCGACCACTGACTGGCAAGTGC
TGCAGGACACCGGCACTGTGCATTTGCTGGTGATCTCCGGACAGCACATCAGTCTGCTGGCAGGCGTGATTTATGCGCTG
GTGGGCCTGTTGGTGCGCTGGGGACTATGGCCGCGGACTTTGCCATGGCTGCCCTGGGCGTGCGGTCTGGCATTCGCGTC
GGCGCTCGGGTATGGGTTGCTGGCCGGGTTCGACGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGGCCTGGTTCTGCTCT
GGCGTTTGCGCTTTCGGCATCTGGGCATGACCTGGCCGCTACTGCTATCGCTCAATGCGGTGCTGGTGTTCGAGCCGCTG
GTGAGTCTGCAGCCGGGGTTCTGGCTGTCGTTCTCGGCAGTCGGGATTCTGATCCTTATCTTCAGTGGCCGTCTCGGTGC
CTGGAGCTGGTTACAGAGCTGGACAAGAGCCCAGTGGCTGATCGCCGTCGGTTTGCTGCCGATCCTGATGATGTTGAATC
TGCCGATCAGTATCAGCGGTCCGCTTGCCAATTTGCTGGCTGTGCCCTGGGTCAGCGTGATCGTTCTGCCTGCCGCATTG
ATTGGCACGCTGTTATTGCCCGTTCCGATCGTAGGCGAGGGTCTGTTGTGGCTGGCCGGTGGAGCGCTGGAAGGGCTGTT
CATGTTTCTGGGCTGGATGGCGGACCTTGTGCCTGCCTGGCTGCCCAGTACCACGCCGGCCTGGACTCTGGTCCTGAGTC
TGCTGGGCGCGTTACTGCTCCTGCTACCCAGAGGTGTGCCGATGCGGCCTCTGGGCTGGCCGCTGCTGTTGTTGTGTGTG
TTTCCACCACTCAAGTCGGTGCCCGCCGGACAGGTTGACGTTCTGCAACTGGATGTGGGGCAGGGGCTGTCGATTCTGTT
GCGCACCCGACACCACACCCTGCTGTATGACACCGGGCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGGGTGGTCGTGC
CGGCCATTCGCAAGAGCGGGGTACGGCATCTGGACGTGATGCTGCTCAGTCACGCAGATTCCGATCATGCCGGAGGTGCA
CCGGCAGTCCACAAGGCGTTTACGGTCGGGCGTGTGCTGGGCGGAGATATCGAGCGCCTTGCGCCTGCACTCGGGGCACT
TCGTTGTGAAAACGGTGAGCAGTGGGAGTGGGATGGCGTGGTGTTTTCAACCTGGATCTGGGAGCAGGCACCCGAAGGCA
ATGCAGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGCGAGCGATTGTTGCTGACCGGTGATGTCGACGCAGAGGCTGAA
CAGGCGGCGATCGACAGCGGATTCGACCTGCGCGCCCAGTGGCTTCAGGCACCTCATCACGGCAGTCGGTCCTCGTCCTC
TAAACCGTTTCTGAGAGCGGTCATGCCTAAAGGTGTGCTGATTTCCCGCGGACGCAACAATGCGTTCGGCCATCCACACC
CGCTGGTCATGGCGCGCTATAAATGGAACGGTATCGCCAGCTACGACAGTGCCGAGCTGGGTGCCATCCGTTTGCAACTG
GGTACTTACGGCAGCCCTGAGGCACAGCGCGCGCAGCGACGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.185

96.748

0.602
  comA Ralstonia pseudosolanacearum GMI1000

32.898

100

0.375