Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KHW14_RS08180 Genome accession   NZ_CP074412
Coordinates   1839300..1840016 (+) Length   238 a.a.
NCBI ID   WP_074454496.1    Uniprot ID   A0AA46VYE7
Organism   Pseudomonas viridiflava strain U625     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1834300..1845016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW14_RS08160 (KHW14_08160) - 1834430..1835320 (-) 891 WP_122415534.1 DUF6708 domain-containing protein -
  KHW14_RS08165 (KHW14_08165) - 1835557..1836459 (-) 903 WP_122415535.1 DUF6708 domain-containing protein -
  KHW14_RS08170 (KHW14_08170) - 1836576..1836821 (-) 246 WP_122415536.1 hypothetical protein -
  KHW14_RS08175 (KHW14_08175) comA 1837051..1839267 (+) 2217 WP_122415537.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHW14_RS08180 (KHW14_08180) exbB 1839300..1840016 (+) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHW14_RS08185 (KHW14_08185) - 1840013..1840444 (+) 432 WP_004884601.1 biopolymer transporter ExbD -
  KHW14_RS08190 (KHW14_08190) lpxK 1840444..1841439 (+) 996 WP_122422618.1 tetraacyldisaccharide 4'-kinase -
  KHW14_RS08195 (KHW14_08195) - 1841457..1841642 (+) 186 WP_004884599.1 Trm112 family protein -
  KHW14_RS08200 (KHW14_08200) kdsB 1841639..1842403 (+) 765 WP_004884598.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHW14_RS08205 (KHW14_08205) murB 1842438..1843457 (+) 1020 WP_122581476.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.42 Da        Isoelectric Point: 9.1401

>NTDB_id=564743 KHW14_RS08180 WP_074454496.1 1839300..1840016(+) (exbB) [Pseudomonas viridiflava strain U625]
MIEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQDQKLDKEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=564743 KHW14_RS08180 WP_074454496.1 1839300..1840016(+) (exbB) [Pseudomonas viridiflava strain U625]
ATGATAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAACGGCTCTGGACGCTGCGCGCCAGCCGTATCACGCCGC
CGCACTTGCTGGGGCAGGTCTGGCAGTGGATTCAGGATCAGAAACTCGATAAAGAGAAGCTCAAGCAACTGCGTGCCGAT
TCGCCTCTGGGTGAAATCCTTGCGGCAGGCCTGGCCAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCAGCGCGGGTCATTCATGATCTGGAGCGTTACCTGAGTGCGCTGGGTTCGATTGCTGCGATGGCGCCGTTGCTGG
GTTTGTTGGGCACCGTGCTGGGCATGATCGATATCTTCGGATCTTTCAACAGCTCTGGAGCCACGGCCAACGCCGGTGTT
CTCGCGGGCGGTATTTCCAAGGCGCTGATCTGTACCGCGTCGGGCCTGATCGTGGCCATTCCGGCCATCTTCTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTTGAGGTGGTGCAGGGCG
ACCGTGACGTCGATCTGATCGACGCCAAGGTCGACCTCAAGTCCCTGGCCAAGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

88.235

0.697