Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KHW13_RS07210 Genome accession   NZ_CP074411
Coordinates   1586942..1589158 (+) Length   738 a.a.
NCBI ID   WP_213568135.1    Uniprot ID   -
Organism   Pseudomonas syringae strain Susan762     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1581942..1594158
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW13_RS07195 (KHW13_07195) - 1584281..1584904 (+) 624 WP_003346579.1 glutathione S-transferase -
  KHW13_RS07200 (KHW13_07200) - 1585088..1586020 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  KHW13_RS07205 (KHW13_07205) - 1586017..1586805 (+) 789 WP_003421319.1 ABC transporter permease -
  KHW13_RS07210 (KHW13_07210) comA 1586942..1589158 (+) 2217 WP_213568135.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHW13_RS07215 (KHW13_07215) exbB 1589201..1589917 (+) 717 WP_213568136.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHW13_RS07220 (KHW13_07220) - 1589914..1590345 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  KHW13_RS07225 (KHW13_07225) lpxK 1590345..1591340 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  KHW13_RS07230 (KHW13_07230) - 1591358..1591543 (+) 186 WP_002552679.1 Trm112 family protein -
  KHW13_RS07235 (KHW13_07235) kdsB 1591540..1592304 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHW13_RS07240 (KHW13_07240) murB 1592339..1593358 (+) 1020 WP_213568137.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80477.69 Da        Isoelectric Point: 10.1974

>NTDB_id=564718 KHW13_RS07210 WP_213568135.1 1586942..1589158(+) (comA) [Pseudomonas syringae strain Susan762]
MRTGMIALALGLLALRFLPALPPTWLLLLMPTLALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGELLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRFLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVEEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDARGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=564718 KHW13_RS07210 WP_213568135.1 1586942..1589158(+) (comA) [Pseudomonas syringae strain Susan762]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGACACTGGCGTTGATGCTGCTGCCGTTTCGCACCTACCCACTGGCGCTGTTCCTGCTCGGTTTCACCT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGTTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGCCAGCCCGTGAACAGCGGGGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTATGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTGAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGGCTATCGAGCACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCTTTG
GTCGCAGGCTTGGCGCGCTGGGGGCTGTGGCCACGCTTTTTGCCCTGGCTGCCGTGGGCGTGTGCGCTGGCGTTCAGCGC
TGCACTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCAGTCCGGCGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTCAGTGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGCTGATCGCCGTTGGCTTGTTGCCGATCTTGCTGGCGCTGAACT
TGCCGATCAGCCTCAGTGGGCCGTTCGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTAGTCGAGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGACGCGGTGGCGGCAGCGTTGCCGGCCTGGCTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGTT
TGCTCGGGGCGTTACTCTTGTTGCTGCCCAAGGGCGTGCCCATGCGTCCGCTTGGCTGGCCGTTGCTGTTGCTGTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAACTGGCCAGACTCGCCCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTTGACGCCAGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTTAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.291

97.019

0.604
  comA Ralstonia pseudosolanacearum GMI1000

35.196

100

0.401