Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KHW13_RS07215 Genome accession   NZ_CP074411
Coordinates   1589201..1589917 (+) Length   238 a.a.
NCBI ID   WP_213568136.1    Uniprot ID   -
Organism   Pseudomonas syringae strain Susan762     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584201..1594917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW13_RS07195 (KHW13_07195) - 1584281..1584904 (+) 624 WP_003346579.1 glutathione S-transferase -
  KHW13_RS07200 (KHW13_07200) - 1585088..1586020 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  KHW13_RS07205 (KHW13_07205) - 1586017..1586805 (+) 789 WP_003421319.1 ABC transporter permease -
  KHW13_RS07210 (KHW13_07210) comA 1586942..1589158 (+) 2217 WP_213568135.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHW13_RS07215 (KHW13_07215) exbB 1589201..1589917 (+) 717 WP_213568136.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHW13_RS07220 (KHW13_07220) - 1589914..1590345 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  KHW13_RS07225 (KHW13_07225) lpxK 1590345..1591340 (+) 996 WP_024648606.1 tetraacyldisaccharide 4'-kinase -
  KHW13_RS07230 (KHW13_07230) - 1591358..1591543 (+) 186 WP_002552679.1 Trm112 family protein -
  KHW13_RS07235 (KHW13_07235) kdsB 1591540..1592304 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHW13_RS07240 (KHW13_07240) murB 1592339..1593358 (+) 1020 WP_213568137.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25832.40 Da        Isoelectric Point: 7.9113

>NTDB_id=564719 KHW13_RS07215 WP_213568136.1 1589201..1589917(+) (exbB) [Pseudomonas syringae strain Susan762]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANVGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=564719 KHW13_RS07215 WP_213568136.1 1589201..1589917(+) (exbB) [Pseudomonas syringae strain Susan762]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAACTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATTGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAATGTCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.095

88.235

0.689