Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KHW13_RS03270 Genome accession   NZ_CP074411
Coordinates   744875..746212 (-) Length   445 a.a.
NCBI ID   WP_003344575.1    Uniprot ID   A0A3M4Y9G0
Organism   Pseudomonas syringae strain Susan762     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 739875..751212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW13_RS03255 (KHW13_03255) - 739997..743200 (+) 3204 WP_213568003.1 PilC/PilY family type IV pilus protein -
  KHW13_RS03260 (KHW13_03260) - 743212..743619 (+) 408 WP_016567131.1 type IV pilin protein -
  KHW13_RS03265 (KHW13_03265) thiO 743645..744748 (+) 1104 WP_003344577.1 glycine oxidase ThiO -
  KHW13_RS03270 (KHW13_03270) pilR 744875..746212 (-) 1338 WP_003344575.1 sigma-54 dependent transcriptional regulator Regulator
  KHW13_RS03275 (KHW13_03275) pilS 746215..747807 (-) 1593 WP_016567133.1 ATP-binding protein Regulator
  KHW13_RS03280 (KHW13_03280) - 747797..748036 (-) 240 WP_032607804.1 PP0621 family protein -
  KHW13_RS03285 (KHW13_03285) - 748156..749178 (-) 1023 WP_003344571.1 outer membrane protein assembly factor BamD -
  KHW13_RS03290 (KHW13_03290) rluD 749328..750290 (+) 963 WP_002551999.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KHW13_RS03295 (KHW13_03295) pgeF 750287..751015 (+) 729 WP_213568004.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49669.60 Da        Isoelectric Point: 6.2986

>NTDB_id=564708 KHW13_RS03270 WP_003344575.1 744875..746212(-) (pilR) [Pseudomonas syringae strain Susan762]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRIDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=564708 KHW13_RS03270 WP_003344575.1 744875..746212(-) (pilR) [Pseudomonas syringae strain Susan762]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCGCGTAACGTTGCCGAAGCCCACGACTGGCTGGCCCGCGAGCCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGACGGCAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGGAGCATCGACAATC
GACTGCTGGGCGACTCGCTGGCGATGCGTACCTTGCGCAATCAGATTGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGCCCACGCATCGACAAACCTTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTGATGGAGAGCGAATTCTTCGGTCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCAGGTCGGTTCCGGCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTACGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCAGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCTCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)

Sigma-54 interaction domain (Sigma54_activat)

(136-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M4Y9G0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

77.201

99.551

0.769
  pilR Acinetobacter baumannii strain A118

48.608

100

0.51
  luxO Vibrio cholerae strain A1552

37.613

99.775

0.375