Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KHW15_RS08010 Genome accession   NZ_CP074410
Coordinates   1758813..1761029 (+) Length   738 a.a.
NCBI ID   WP_213569378.1    Uniprot ID   -
Organism   Pseudomonas syringae strain U643     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1753813..1766029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW15_RS07995 (KHW15_07995) - 1756152..1756775 (+) 624 WP_003346579.1 glutathione S-transferase -
  KHW15_RS08000 (KHW15_08000) - 1756959..1757891 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  KHW15_RS08005 (KHW15_08005) - 1757888..1758676 (+) 789 WP_003421319.1 ABC transporter permease -
  KHW15_RS08010 (KHW15_08010) comA 1758813..1761029 (+) 2217 WP_213569378.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHW15_RS08015 (KHW15_08015) exbB 1761072..1761788 (+) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHW15_RS08020 (KHW15_08020) - 1761785..1762216 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  KHW15_RS08025 (KHW15_08025) lpxK 1762216..1763211 (+) 996 WP_096113610.1 tetraacyldisaccharide 4'-kinase -
  KHW15_RS08030 (KHW15_08030) - 1763229..1763414 (+) 186 WP_002552679.1 Trm112 family protein -
  KHW15_RS08035 (KHW15_08035) kdsB 1763411..1764175 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHW15_RS08040 (KHW15_08040) murB 1764210..1765229 (+) 1020 WP_017279274.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80245.41 Da        Isoelectric Point: 10.3197

>NTDB_id=564688 KHW15_RS08010 WP_213569378.1 1758813..1761029(+) (comA) [Pseudomonas syringae strain U643]
MRTGMIALALGLLALRFLPALPPTWLLLLMPTLALMLLPFRTYPLALFLLGFTWACVSAQWALSDRLAPRLDGQTLWVQG
KVVGLPSVAEGVVRFELEGAWSRRAKLPARIRVAWYGGQPVNSGERWRMAVKLKRPSGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDALRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRSLPWLPWACALAFSAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWRWWQSWTRAQWLIAVGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALQWLFVFLDAVAAALPAWLPSAVPIWAWWLSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLESVPEGQVDVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHSDADHAGGA
AAVHQAFPVSRVLGGELARLAPQLDARLCESGARWEWDGVVFSTWRWEQGPDGNPASCILSVDAGGERLLLAGDIDVSAE
RAAIDSGFDLRAHWLQSPHHGSRTSSSKAFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRGLGIASYDSAELGAVRLQL
GTFGAPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=564688 KHW15_RS08010 WP_213569378.1 1758813..1761029(+) (comA) [Pseudomonas syringae strain U643]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGGCTGCTTGCCCTGCGTTTTCTACCGGCGCTGCCGCCGACCTGGCTATT
GCTGCTGATGCCGACACTGGCGTTGATGCTGCTGCCGTTTCGTACCTATCCACTGGCGTTGTTCCTGCTCGGTTTCACCT
GGGCCTGCGTGTCGGCGCAGTGGGCGCTGAGTGACCGGTTGGCGCCGCGTCTCGATGGTCAGACGCTGTGGGTACAGGGC
AAGGTGGTCGGTTTGCCGAGTGTCGCCGAAGGTGTGGTGCGTTTCGAGCTGGAAGGCGCCTGGTCACGACGTGCCAAACT
GCCCGCGCGAATCCGGGTGGCCTGGTACGGCGGCCAGCCCGTGAACAGCGGGGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGACCGTCCGGGCTGGTCAATCCCGATGCTTTCGACTACGAGGCCTGGCTGCTGGCGCAGCGCATCGGTGCGACCGGC
ACGGTGGTGGATGGTCAGCTATTGGCACCCGCGCGTGCCGCCTGGCGCGATGCCCTTCGTCAGCGCCTGCTGGCGGTCGA
TGCGCAGGGCCGGGAGGGCGGTCTGGCAGCGCTGGTGCTGGGCGATGGCTCAGGATTGTCGAGTACCGACTGGCAGGTGT
TGCAGGATACCGGCACTGTGCATCTGCTGGTCATTTCCGGCCAGCACATCGGTTTGCTGGCCGGGGTGATTTACGCCTTG
GTCGCAGGCCTGGCGCGTTGGGGGCTGTGGCCACGCTCTTTGCCCTGGCTGCCGTGGGCGTGTGCACTGGCGTTCAGCGC
TGCGCTGGGCTACGGACTGCTGGCCGGTTTCGAGGTGCCGGTCCGACGCGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGCTTGCGTTTTCGCCATCTGGGCGTGGTCTGGCCCTTGTTGCTGTCCTTCAACGCGGTGCTGATCTTCGAGCCGCTG
GTGACGCTGCAGCCGGGTTTCTGGCTGTCCTTCGCGGCGGTCGGCATTCTGATCCTGATTTTTAGCGGGCGTCTCGGCGC
CTGGCGCTGGTGGCAAAGCTGGACACGGGCGCAGTGGCTGATCGCCGTCGGCTTGTTGCCGATCTTGCTGGCGCTGAACT
TGCCGATCAGTCTCAGTGGGCCGTTCGCCAACTTGCTTGCCGTGCCTTGGGTCAGCGTGATCGTCCTGCCTCCGGCATTG
CTCGGAACGCTGTTGCTGCCAGTCCCTGTAGTCGGGGAAGGTCTGCTATGGCTGGCGGGCGGGGCGCTGCAGTGGCTGTT
CGTGTTCCTCGATGCGGTGGCTGCCGCATTGCCGGCCTGGTTGCCCAGTGCGGTGCCAATCTGGGCATGGTGGTTGAGTT
TGCTCGGGGCCTTGCTCTTGTTGCTGCCCAAGGGCGTGCCCATGCGTCCGCTGGGCTGGCCGTTGCTGTTGCTTTGCGTT
TTTCCGCCGCTCGAATCAGTGCCTGAAGGCCAGGTAGACGTGTTGCAACTGGATGTGGGGCAGGGCCTGGCGATTCTCCT
GCGCACTCGCAATCACACACTTCTGTATGACGCAGGTCCGCGTTTCGGTGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCAGGCGTCCGCCATCTTGACCTGATGTTGATCAGCCATTCCGACGCAGACCATGCCGGCGGTGCG
GCGGCGGTTCATCAGGCCTTTCCGGTGAGCCGGGTGCTGGGTGGCGAACTGGCCAGACTCGCCCCGCAACTCGACGCCCG
ATTGTGCGAGAGCGGTGCACGCTGGGAGTGGGATGGCGTGGTGTTTTCCACGTGGCGCTGGGAGCAGGGGCCTGACGGCA
ACCCCGCCTCCTGCATCCTCAGCGTCGACGCCGGGGGCGAGCGTCTGCTGCTGGCGGGCGATATCGACGTGAGCGCCGAG
CGCGCGGCAATCGACAGCGGGTTCGACCTGCGTGCCCACTGGTTGCAGTCGCCGCATCACGGCAGCCGGACCTCATCGTC
CAAAGCGTTTCTTCGCGCCGTCGCACCGGTCGGCGTGCTGATTTCCCGTGGTCGCAACAATGCGTTCGGTCACCCACACC
CGTTGGTCATGGCGCGCTATCGAGGCTTGGGCATCGCCAGTTACGACAGTGCCGAGCTGGGCGCTGTGCGTCTGCAACTG
GGTACGTTCGGAGCGCCGCAGGCCGAGCGTGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.291

97.019

0.604
  comA Ralstonia pseudosolanacearum GMI1000

35.196

100

0.401