Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KHW15_RS08015 Genome accession   NZ_CP074410
Coordinates   1761072..1761788 (+) Length   238 a.a.
NCBI ID   WP_003317467.1    Uniprot ID   -
Organism   Pseudomonas syringae strain U643     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1756072..1766788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHW15_RS07995 (KHW15_07995) - 1756152..1756775 (+) 624 WP_003346579.1 glutathione S-transferase -
  KHW15_RS08000 (KHW15_08000) - 1756959..1757891 (+) 933 WP_003317464.1 ABC transporter ATP-binding protein -
  KHW15_RS08005 (KHW15_08005) - 1757888..1758676 (+) 789 WP_003421319.1 ABC transporter permease -
  KHW15_RS08010 (KHW15_08010) comA 1758813..1761029 (+) 2217 WP_213569378.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KHW15_RS08015 (KHW15_08015) exbB 1761072..1761788 (+) 717 WP_003317467.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KHW15_RS08020 (KHW15_08020) - 1761785..1762216 (+) 432 WP_003317468.1 biopolymer transporter ExbD -
  KHW15_RS08025 (KHW15_08025) lpxK 1762216..1763211 (+) 996 WP_096113610.1 tetraacyldisaccharide 4'-kinase -
  KHW15_RS08030 (KHW15_08030) - 1763229..1763414 (+) 186 WP_002552679.1 Trm112 family protein -
  KHW15_RS08035 (KHW15_08035) kdsB 1763411..1764175 (+) 765 WP_003317470.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KHW15_RS08040 (KHW15_08040) murB 1764210..1765229 (+) 1020 WP_017279274.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25804.35 Da        Isoelectric Point: 7.9113

>NTDB_id=564689 KHW15_RS08015 WP_003317467.1 1761072..1761788(+) (exbB) [Pseudomonas syringae strain U643]
MVEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=564689 KHW15_RS08015 WP_003317467.1 1761072..1761788(+) (exbB) [Pseudomonas syringae strain U643]
ATGGTAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCC
GATTATTCTGAGCTCCATCGCCGCCGCCGGCATCATCATCGAGCGCCTGTGGACGTTGCGTGCCAGCCGTATCACGCCAC
CGCACCTGCTCGGGCAGGTCTGGCAGTGGATTCAGGAAAAGAAGCTGGACGGCGAAAAACTCAAGCAGCTGCGCGCTGAC
TCGCCGCTGGGCGAAATCCTTGCCGCAGGTCTGGCCAATTCCAGGCATGGTCGCGAGATCATGAAGGAGTGCATCGAAGA
AGCCGCTGCCCGGGTCATTCATGAGCTGGAGCGCTACCTCAGCGCACTGGGCTCGATCGCTGCCATGGCGCCGCTGCTTG
GTTTGCTGGGCACCGTGCTGGGCATGATCGATATCTTCGGCTCGTTCAACAGTTCCGGGGCCACCGCCAATGCCGGCGTG
CTGGCAGGTGGTATTTCCAAGGCGCTGATCTGTACGGCGTCGGGTCTTATCGTCGCGATCCCGGCGATTTTCTTTCATCG
CTTCCTGCAGAGCCGCGTCGATGAGTTGGTGGTCGGCATGGAACAACAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCG
ACCGCGATGTCGATCTGATCGACGCCAAGATCGATCTCAAGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693