Detailed information NTG0564678

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: KHW15_RS03455
• Genome accession: NZ_CP074410
• Coordinates: 790329..791666 (-)
• Length: 445 a.a.
• NCBI ID: WP_074955982.1
• Uniprot ID: -
• Organism: Pseudomonas syringae strain U643
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 785329..796666

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KHW15_RS03440 (KHW15_03440)	-	785457..788654 (+)	3198	WP_024683036.1	PilC/PilY family type IV pilus protein	-
KHW15_RS03445 (KHW15_03445)	-	788666..789073 (+)	408	WP_046266217.1	type IV pilin protein	-
KHW15_RS03450 (KHW15_03450)	thiO	789099..790202 (+)	1104	WP_046266216.1	glycine oxidase ThiO	-
KHW15_RS03455 (KHW15_03455)	pilR	790329..791666 (-)	1338	WP_074955982.1	sigma-54 dependent transcriptional regulator	Regulator
KHW15_RS03460 (KHW15_03460)	pilS	791669..793261 (-)	1593	WP_016567133.1	ATP-binding protein	Regulator
KHW15_RS03465 (KHW15_03465)	-	793251..793490 (-)	240	WP_011266590.1	PP0621 family protein	-
KHW15_RS03470 (KHW15_03470)	-	793610..794632 (-)	1023	WP_003344571.1	outer membrane protein assembly factor BamD	-
KHW15_RS03475 (KHW15_03475)	rluD	794782..795744 (+)	963	WP_002551999.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
KHW15_RS03480 (KHW15_03480)	pgeF	795741..796469 (+)	729	WP_024648765.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 445 a.a.
• Molecular weight: 49655.57 Da
• Isoelectric Point: 6.2986

>NTDB_id=564678 KHW15_RS03455 WP_074955982.1 790329..791666(-) (pilR) [Pseudomonas syringae strain U643]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNVDTAINALKAGAFDFVTKPVDLGRLRELVNSALSLPGAPPTRSIDNRLLGDSLAMRTLRNQIGKLARSQAPIY
ISGESGSGKELVARLIHEQGPRVDKPFIPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHTGTLFLDEVADLP
LAMQVKLLRAIQEKSIRSVGGQQEQIVDVRILCATHKNLNAEVAAGRFRQDLYYRLNVIEVRVPSLRERREDIDQLAASV
LKRLAGNGAQPVARLNAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLTESASPQESDGPSLADIDNLED
YLESVERQLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide

• Length: 1338 bp

>NTDB_id=564678 KHW15_RS03455 WP_074955982.1 790329..791666(-) (pilR) [Pseudomonas syringae strain U643]
ATGAGCCAACGGCAAAAAATCCTGATAGTCGATGATGAGCCGGATATCCGCGAACTCCTGGAGATCACGCTGGGACGCAT
GAAACTCGACACCCGCAGTGCACGTAACGTTGCCGAAGCCCATGACTGGCTGGCCCGCGAACCGTTCGACATGTGCCTGA
CCGACATGCGTCTGCCTGATGGTAATGGCCTTGAGCTGGTGCAACACATACAGCACGGCTACCCCCACGTGCCGGTGGCG
ATGATCACTGCACACGGCAATGTGGATACCGCGATCAACGCGCTGAAGGCCGGGGCTTTCGATTTTGTGACCAAGCCGGT
CGACCTCGGCAGGCTGCGCGAGCTGGTCAATAGCGCGCTGAGCCTGCCCGGCGCACCACCCACGCGAAGCATCGACAACC
GACTGCTGGGCGACTCGCTGGCAATGCGTACCTTGCGCAATCAGATCGGCAAGCTGGCCCGCAGCCAGGCGCCGATCTAC
ATCAGCGGCGAGTCCGGCAGCGGCAAGGAGCTTGTAGCGAGGCTGATCCACGAGCAGGGTCCGCGCGTCGACAAGCCGTT
CATACCGGTGAATTGCGGTGCCATCCCTTCCGAACTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCAGCG
GTGCCCACGAAGACAAGCCCGGTCTGTTTCAAGCGGCGCACACCGGCACGCTGTTTCTCGATGAGGTCGCCGACCTGCCG
CTGGCCATGCAGGTCAAACTGCTGCGCGCCATCCAGGAAAAATCCATTCGCAGCGTCGGCGGCCAGCAAGAGCAGATCGT
CGACGTGCGCATTCTGTGCGCCACCCACAAGAACCTGAATGCAGAGGTCGCGGCAGGTCGGTTCCGTCAGGATCTGTATT
ACCGATTGAACGTGATCGAAGTGCGCGTGCCCTCGTTGCGCGAGCGGCGTGAGGATATCGACCAACTGGCAGCCAGCGTG
CTCAAGCGCCTTGCCGGGAACGGCGCACAACCCGTCGCGCGCCTGAACGCGCAGGCGCTGGAAACGCTGAAGAGCTACCG
CTTCCCCGGTAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACGCTGTGCGAGAACGACGAAATCCACGCCA
GCGACCTGCGCCTGACAGAGTCAGCCAGCCCTCAGGAGAGCGACGGCCCGAGCCTGGCCGACATCGACAACCTTGAAGAC
TACCTGGAAAGCGTCGAACGCCAGCTCATTCTGCAGGCTCTGGAAGAAACCCGCTGGAACCGCACCGCCGCAGCAGAAAG
GCTCAGCTTGTCGTTCAGGTCACTGCGCTATCGCCTGAAGAAGCTGGGCCTGGATTGA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Sigma-54 interaction domain (Sigma54_activat) (136-301)

• Bacterial regulatory protein, Fis family (HTH_8) (402-442)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	76.975	99.551	0.766
pilR	Acinetobacter baumannii strain A118	48.608	100	0.51
luxO	Vibrio cholerae strain A1552	37.613	99.775	0.375