Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MCS24_RS04340 Genome accession   NZ_CP092050
Coordinates   1002314..1002922 (+) Length   202 a.a.
NCBI ID   WP_004585347.1    Uniprot ID   Q7MW36
Organism   Porphyromonas gingivalis strain W50/BR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 997314..1007922
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCS24_RS04305 (MCS24_04310) - 998433..998630 (+) 198 Protein_846 tyrosine-type recombinase/integrase -
  MCS24_RS04310 (MCS24_04315) - 998664..999137 (+) 474 WP_005874700.1 DUF1896 domain-containing protein -
  MCS24_RS04315 (MCS24_04320) - 999272..999619 (+) 348 WP_010956131.1 hypothetical protein -
  MCS24_RS04320 (MCS24_04325) - 1000025..1000714 (+) 690 Protein_849 transposase -
  MCS24_RS04325 (MCS24_04330) - 1000862..1001362 (+) 501 WP_005875036.1 IS5/IS1182 family transposase -
  MCS24_RS04330 - 1001313..1001675 (+) 363 WP_236641746.1 transposase -
  MCS24_RS04335 - 1001698..1001877 (+) 180 WP_173539883.1 transposase -
  MCS24_RS04340 (MCS24_04340) ruvA 1002314..1002922 (+) 609 WP_004585347.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21456.84 Da        Isoelectric Point: 5.3270

>NTDB_id=564591 MCS24_RS04340 WP_004585347.1 1002314..1002922(+) (ruvA) [Porphyromonas gingivalis strain W50/BR1]
MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide


Download         Length: 609 bp        

>NTDB_id=564591 MCS24_RS04340 WP_004585347.1 1002314..1002922(+) (ruvA) [Porphyromonas gingivalis strain W50/BR1]
ATGATAGAGTATCTCAAGGGTGCAATAGTCGGTTTGACGCCGACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACAGCTCATCCTATCTTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCCGTGAAGGGCATCGGTCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAACTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(159-200)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MW36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.386
  ruvA Streptococcus pneumoniae TIGR4

37.624

100

0.376
  ruvA Streptococcus pneumoniae R6

37.129

100

0.371
  ruvA Streptococcus pneumoniae D39

37.129

100

0.371