Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KHA81_RS17115 Genome accession   NZ_CP074391
Coordinates   3464208..3464897 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus amyloliquefaciens strain L-17     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3459208..3469897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS17080 - 3459406..3459888 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHA81_RS17085 flgM 3459903..3460169 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHA81_RS17090 - 3460239..3460658 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  KHA81_RS17095 comFC 3460732..3461421 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  KHA81_RS17100 - 3461427..3461711 (-) 285 WP_003151389.1 competence protein ComFB -
  KHA81_RS17105 comFA 3461769..3463154 (-) 1386 WP_015387627.1 DEAD/DEAH box helicase Machinery gene
  KHA81_RS17110 - 3463262..3464110 (-) 849 WP_003151387.1 DegV family protein -
  KHA81_RS17115 degU 3464208..3464897 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHA81_RS17120 degS 3464974..3466137 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator
  KHA81_RS17125 - 3466360..3467007 (+) 648 WP_003151384.1 YigZ family protein -
  KHA81_RS17130 - 3467012..3468226 (+) 1215 WP_015387625.1 LCP family protein -
  KHA81_RS17135 - 3468316..3469392 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=564585 KHA81_RS17115 WP_003219701.1 3464208..3464897(-) (degU) [Bacillus amyloliquefaciens strain L-17]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=564585 KHA81_RS17115 WP_003219701.1 3464208..3464897(-) (degU) [Bacillus amyloliquefaciens strain L-17]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1