Detailed information NTG0564585

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: MCS24_RS02980
• Genome accession: NZ_CP092050
• Coordinates: 700563..701867 (-)
• Length: 434 a.a.
• NCBI ID: WP_010956212.1
• Uniprot ID: Q7MVG1
• Organism: Porphyromonas gingivalis strain W50/BR1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 695563..706867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MCS24_RS02965 (MCS24_02970)	murF	697051..698355 (+)	1305	WP_005873680.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
MCS24_RS02970 (MCS24_02975)	rpoN	698349..699806 (+)	1458	WP_005873663.1	RNA polymerase factor sigma-54	-
MCS24_RS02975 (MCS24_02980)	-	699770..700537 (-)	768	WP_005873692.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
MCS24_RS02980 (MCS24_02985)	rarA	700563..701867 (-)	1305	WP_010956212.1	replication-associated recombination protein A	Machinery gene
MCS24_RS02985 (MCS24_02990)	-	702014..704662 (+)	2649	WP_230455974.1	DUF5686 and carboxypeptidase-like regulatory domain-containing protein	-
MCS24_RS02990 (MCS24_02995)	-	705053..706513 (+)	1461	WP_005873636.1	sodium:solute symporter	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48303.17 Da
• Isoelectric Point: 5.6527

>NTDB_id=564585 MCS24_RS02980 WP_010956212.1 700563..701867(-) (rarA) [Porphyromonas gingivalis strain W50/BR1]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANT
SFWTPQMHTVHEAKLGERMKRWWKREKSQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=564585 MCS24_RS02980 WP_010956212.1 700563..701867(-) (rarA) [Porphyromonas gingivalis strain W50/BR1]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATCCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTTAGCTCCGGTGTGAAGGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCACTTCTGGCAGCCGTAGAGCGAGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTCGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATACGTCAGCGCTTGCAAGAAAACCCCGCTGCTTTCGACAAGGGAGGC
GAACTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAATCCGAATGCCATGCTCATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACTTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTACAAATACTCGCATGATTTTCCGGAACACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ATCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (10-131)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

3D structure

• AlphaFold DB: Q7MVG1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396