Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KHA81_RS17095 Genome accession   NZ_CP074391
Coordinates   3460732..3461421 (-) Length   229 a.a.
NCBI ID   WP_196758106.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3455732..3466421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS17060 fliW 3455823..3456254 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  KHA81_RS17065 - 3456284..3456853 (-) 570 WP_015387630.1 DUF6470 family protein -
  KHA81_RS17070 flgL 3456944..3457861 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  KHA81_RS17075 flgK 3457873..3459390 (-) 1518 WP_015387629.1 flagellar hook-associated protein FlgK -
  KHA81_RS17080 - 3459406..3459888 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHA81_RS17085 flgM 3459903..3460169 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHA81_RS17090 - 3460239..3460658 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  KHA81_RS17095 comFC 3460732..3461421 (-) 690 WP_196758106.1 phosphoribosyltransferase family protein Machinery gene
  KHA81_RS17100 - 3461427..3461711 (-) 285 WP_003151389.1 competence protein ComFB -
  KHA81_RS17105 comFA 3461769..3463154 (-) 1386 WP_015387627.1 DEAD/DEAH box helicase Machinery gene
  KHA81_RS17110 - 3463262..3464110 (-) 849 WP_003151387.1 DegV family protein -
  KHA81_RS17115 degU 3464208..3464897 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHA81_RS17120 degS 3464974..3466137 (-) 1164 WP_015387626.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25199.91 Da        Isoelectric Point: 8.4060

>NTDB_id=564583 KHA81_RS17095 WP_196758106.1 3460732..3461421(-) (comFC) [Bacillus amyloliquefaciens strain L-17]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LCNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=564583 KHA81_RS17095 WP_196758106.1 3460732..3461421(-) (comFC) [Bacillus amyloliquefaciens strain L-17]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTGTAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598