Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   KHA81_RS11985 Genome accession   NZ_CP074391
Coordinates   2491890..2492267 (-) Length   125 a.a.
NCBI ID   WP_015388005.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain L-17     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2486890..2497267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHA81_RS11945 - 2487388..2488182 (+) 795 WP_014305407.1 YqhG family protein -
  KHA81_RS11950 sinI 2488359..2488532 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  KHA81_RS11955 sinR 2488566..2488901 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  KHA81_RS11960 tasA 2488949..2489734 (-) 786 WP_015388008.1 biofilm matrix protein TasA -
  KHA81_RS11965 sipW 2489798..2490382 (-) 585 WP_012117977.1 signal peptidase I SipW -
  KHA81_RS11970 tapA 2490354..2491025 (-) 672 WP_015388007.1 amyloid fiber anchoring/assembly protein TapA -
  KHA81_RS11975 - 2491285..2491614 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  KHA81_RS11980 - 2491654..2491833 (-) 180 WP_003153093.1 YqzE family protein -
  KHA81_RS11985 comGG 2491890..2492267 (-) 378 WP_015388005.1 competence type IV pilus minor pilin ComGG Machinery gene
  KHA81_RS11990 comGF 2492268..2492768 (-) 501 WP_225879914.1 competence type IV pilus minor pilin ComGF -
  KHA81_RS11995 comGE 2492677..2492991 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  KHA81_RS12000 comGD 2492975..2493412 (-) 438 WP_015388002.1 competence type IV pilus minor pilin ComGD Machinery gene
  KHA81_RS12005 comGC 2493402..2493668 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene
  KHA81_RS12010 comGB 2493715..2494752 (-) 1038 WP_014305414.1 competence type IV pilus assembly protein ComGB Machinery gene
  KHA81_RS12015 comGA 2494739..2495809 (-) 1071 WP_003153083.1 competence type IV pilus ATPase ComGA Machinery gene
  KHA81_RS12020 - 2496001..2496951 (-) 951 WP_014305415.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14182.19 Da        Isoelectric Point: 9.9592

>NTDB_id=564560 KHA81_RS11985 WP_015388005.1 2491890..2492267(-) (comGG) [Bacillus amyloliquefaciens strain L-17]
MYKSDGFIYPAVLFVSAAVLLVISYTSSDFITRKTFAKEAGEYWIGENLLQNGALLSSRHMTQGQKVQTGIQRFPYGTVS
FRITGSDRRETVQVTIQAETVSGTRREAHLLFDQKKKQLIQWTEV

Nucleotide


Download         Length: 378 bp        

>NTDB_id=564560 KHA81_RS11985 WP_015388005.1 2491890..2492267(-) (comGG) [Bacillus amyloliquefaciens strain L-17]
ATGTACAAATCTGACGGTTTTATCTATCCCGCGGTTCTGTTTGTTTCTGCCGCAGTTTTACTTGTCATCAGCTATACTTC
ATCTGATTTCATCACCCGAAAAACATTTGCGAAAGAGGCCGGGGAGTACTGGATCGGAGAGAATCTGCTCCAAAACGGCG
CGCTGCTGTCAAGCCGCCATATGACACAGGGACAAAAGGTCCAAACTGGTATACAGCGTTTTCCGTACGGAACTGTTTCC
TTCCGCATCACCGGGAGTGATCGCCGGGAAACGGTTCAGGTTACAATTCAGGCCGAAACAGTGTCAGGCACGAGACGGGA
GGCTCACCTTTTGTTCGATCAGAAGAAGAAACAGCTGATTCAATGGACGGAAGTATAA

Domains

Predicted by InterproScan.

ComG operon protein 7 (ComGG)

(30-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

50.806

99.2

0.504