Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MCS25_RS03665 Genome accession   NZ_CP092048
Coordinates   873887..874495 (-) Length   202 a.a.
NCBI ID   WP_004585347.1    Uniprot ID   Q7MW36
Organism   Porphyromonas gingivalis strain W50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 868887..879495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MCS25_RS03665 (MCS25_03670) ruvA 873887..874495 (-) 609 WP_004585347.1 Holliday junction branch migration protein RuvA Machinery gene
  MCS25_RS03670 (MCS25_03675) - 874932..875111 (-) 180 WP_173539883.1 transposase -
  MCS25_RS03675 (MCS25_03680) - 875134..875511 (-) 378 WP_173539891.1 transposase -
  MCS25_RS03680 (MCS25_03685) - 875447..875947 (-) 501 WP_005875036.1 IS5/IS1182 family transposase -
  MCS25_RS03685 (MCS25_03690) - 876095..876784 (-) 690 Protein_732 transposase -
  MCS25_RS03690 (MCS25_03695) - 877190..877537 (-) 348 WP_010956131.1 hypothetical protein -
  MCS25_RS03695 (MCS25_03700) - 877672..878145 (-) 474 WP_005874700.1 DUF1896 domain-containing protein -
  MCS25_RS03700 (MCS25_03705) - 878179..878376 (-) 198 Protein_735 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21456.84 Da        Isoelectric Point: 5.3270

>NTDB_id=564533 MCS25_RS03665 WP_004585347.1 873887..874495(-) (ruvA) [Porphyromonas gingivalis strain W50]
MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTAQLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide


Download         Length: 609 bp        

>NTDB_id=564533 MCS25_RS03665 WP_004585347.1 873887..874495(-) (ruvA) [Porphyromonas gingivalis strain W50]
ATGATAGAGTATCTCAAGGGTGCAATAGTCGGTTTGACGCCGACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACAGCTCATCCTATCTTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCCGTGAAGGGCATCGGTCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAACTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(159-200)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MW36

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.386
  ruvA Streptococcus pneumoniae TIGR4

37.624

100

0.376
  ruvA Streptococcus pneumoniae R6

37.129

100

0.371
  ruvA Streptococcus pneumoniae D39

37.129

100

0.371