Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MA852_RS03335 Genome accession   NZ_CP092025
Coordinates   636761..638734 (-) Length   657 a.a.
NCBI ID   WP_057032557.1    Uniprot ID   -
Organism   Campylobacter coli strain 14158-6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 631761..643734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA852_RS03310 (MA852_03310) - 632494..632739 (+) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -
  MA852_RS03315 (MA852_03315) tsaE 632736..633143 (+) 408 WP_057044183.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  MA852_RS03320 (MA852_03320) lptB 633136..633864 (+) 729 WP_002776419.1 LPS export ABC transporter ATP-binding protein -
  MA852_RS03325 (MA852_03325) - 633864..635114 (+) 1251 WP_057044184.1 RNA polymerase factor sigma-54 -
  MA852_RS03330 (MA852_03330) - 635302..636726 (+) 1425 Protein_642 anaerobic C4-dicarboxylate transporter -
  MA852_RS03335 (MA852_03335) uvrB 636761..638734 (-) 1974 WP_057032557.1 excinuclease ABC subunit UvrB Machinery gene
  MA852_RS03340 (MA852_03340) - 638888..639118 (+) 231 WP_002776426.1 hypothetical protein -
  MA852_RS03345 (MA852_03345) - 639108..639353 (+) 246 WP_002776428.1 hypothetical protein -
  MA852_RS03350 (MA852_03350) Cj0683 639350..639796 (+) 447 WP_002825371.1 type II secretion system protein Machinery gene
  MA852_RS03355 (MA852_03355) - 639793..641631 (+) 1839 WP_057044795.1 primosomal protein N' -
  MA852_RS03360 (MA852_03360) - 641641..643035 (-) 1395 WP_057044797.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75959.38 Da        Isoelectric Point: 6.4586

>NTDB_id=564320 MA852_RS03335 WP_057032557.1 636761..638734(-) (uvrB) [Campylobacter coli strain 14158-6]
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKIELNERLAQFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKIEKIPASERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=564320 MA852_RS03335 WP_057032557.1 636761..638734(-) (uvrB) [Campylobacter coli strain 14158-6]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAGAACAAGCAATACAAGGCATAGTAAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCACAACAAAAGCCTTTGTGCACAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTCATAGA
AAAAGACAGCTCCACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGATATTTATCCTGCTTATTACGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGTGATGAACTGGATGCAATGTATCATTATAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTT
TATCCTACAAGTCAATTTAGTGTAGGAGAAACTAGATTAAAGCAAGCTATTAAAGATATAAAGATAGAACTTAATGAGCG
TTTGGCGCAATTTGAACATGAAAACAAGCTTGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAATTATGCAAGACATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTAGTTACTGTGT
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGCACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAAATTG
AAAAAATACCTGCTAGTGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(158-246)

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.305

99.848

0.502
  uvrB Streptococcus pneumoniae D39

50.305

99.848

0.502