Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MA848_RS02960 Genome accession   NZ_CP092018
Coordinates   574398..575171 (+) Length   257 a.a.
NCBI ID   WP_002866495.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15363C     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 569398..580171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA848_RS02945 (MA848_02945) - 570247..572181 (-) 1935 WP_061405831.1 ribonuclease R family protein -
  MA848_RS02950 (MA848_02950) ilvC 572300..573322 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  MA848_RS02955 (MA848_02955) - 573326..574408 (+) 1083 WP_058000804.1 divergent polysaccharide deacetylase family protein -
  MA848_RS02960 (MA848_02960) dprA 574398..575171 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  MA848_RS02965 (MA848_02965) dprB 575168..575551 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  MA848_RS02970 (MA848_02970) - 575580..576419 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MA848_RS02975 (MA848_02975) msrA 576595..577092 (-) 498 WP_058000805.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MA848_RS02980 (MA848_02980) ppa 577134..577652 (-) 519 WP_002871349.1 inorganic diphosphatase -
  MA848_RS02985 (MA848_02985) adk 577662..578240 (-) 579 WP_058000806.1 adenylate kinase -
  MA848_RS02990 (MA848_02990) aspS 578237..579988 (-) 1752 WP_058000807.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28742.58 Da        Isoelectric Point: 7.6510

>NTDB_id=564185 MA848_RS02960 WP_002866495.1 574398..575171(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 15363C]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=564185 MA848_RS02960 WP_002866495.1 574398..575171(+) (dprA) [Campylobacter jejuni subsp. jejuni strain 15363C]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATTGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGCG
TTTTTTCCTTAGCAAGTATGCTTAAAAATGCCCATCTTTGTGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCGGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTGAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGACTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTAGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAAAGT
GCAAAACTTGCTTTAGAACTCAATAAGCCTTTATATGTTTTACCGCAAAGACTAGGAGAAAGTACAGGGACTAATTTGCT
TTTAAAGGAAAATAAAGCAAAATTGATTTGTGATTTCAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAGTTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTGGCATGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.222

100

0.992
  dprA Helicobacter pylori 26695

49.167

93.385

0.459