Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   MA848_RS02965 Genome accession   NZ_CP092018
Coordinates   575168..575551 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni subsp. jejuni strain 15363C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 570168..580551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA848_RS02945 (MA848_02945) - 570247..572181 (-) 1935 WP_061405831.1 ribonuclease R family protein -
  MA848_RS02950 (MA848_02950) ilvC 572300..573322 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  MA848_RS02955 (MA848_02955) - 573326..574408 (+) 1083 WP_058000804.1 divergent polysaccharide deacetylase family protein -
  MA848_RS02960 (MA848_02960) dprA 574398..575171 (+) 774 WP_002866495.1 DNA-processing protein DprA Machinery gene
  MA848_RS02965 (MA848_02965) dprB 575168..575551 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  MA848_RS02970 (MA848_02970) - 575580..576419 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  MA848_RS02975 (MA848_02975) msrA 576595..577092 (-) 498 WP_058000805.1 peptide-methionine (S)-S-oxide reductase MsrA -
  MA848_RS02980 (MA848_02980) ppa 577134..577652 (-) 519 WP_002871349.1 inorganic diphosphatase -
  MA848_RS02985 (MA848_02985) adk 577662..578240 (-) 579 WP_058000806.1 adenylate kinase -
  MA848_RS02990 (MA848_02990) aspS 578237..579988 (-) 1752 WP_058000807.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=564186 MA848_RS02965 WP_002852281.1 575168..575551(+) (dprB) [Campylobacter jejuni subsp. jejuni strain 15363C]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=564186 MA848_RS02965 WP_002852281.1 575168..575551(+) (dprB) [Campylobacter jejuni subsp. jejuni strain 15363C]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGTGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449