Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   MA544_RS03615 Genome accession   NZ_CP092017
Coordinates   674832..676805 (-) Length   657 a.a.
NCBI ID   WP_002867638.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain 15065A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 669832..681805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MA544_RS03600 (MA544_03600) kdpB 670261..672305 (+) 2045 Protein_703 potassium-transporting ATPase subunit KdpB -
  MA544_RS03605 (MA544_03605) - 672307..672885 (+) 579 WP_052786392.1 potassium-transporting ATPase subunit C -
  MA544_RS03610 (MA544_03610) kdpD 672907..674730 (+) 1824 WP_052786391.1 DUF4118 domain-containing protein -
  MA544_RS03615 (MA544_03615) uvrB 674832..676805 (-) 1974 WP_002867638.1 excinuclease ABC subunit UvrB Machinery gene
  MA544_RS03620 (MA544_03620) - 676959..677189 (+) 231 WP_002852327.1 hypothetical protein -
  MA544_RS03625 (MA544_03625) - 677179..677421 (+) 243 WP_052786390.1 hypothetical protein -
  MA544_RS03630 (MA544_03630) Cj0683 677418..677855 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  MA544_RS03635 (MA544_03635) priA 677837..679690 (+) 1854 WP_079744318.1 primosomal protein N' -
  MA544_RS03640 (MA544_03640) cipA 679700..681094 (-) 1395 WP_002860010.1 DUF2972 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75952.55 Da        Isoelectric Point: 7.0157

>NTDB_id=564141 MA544_RS03615 WP_002867638.1 674832..676805(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain 15065A]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=564141 MA544_RS03615 WP_002867638.1 674832..676805(-) (uvrB) [Campylobacter jejuni subsp. jejuni strain 15065A]
ATGTTAGAACTTACCAGCGAATTTAAACCTAGTCCTGATCAACAAGAAGCCATAAAAGGTATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATGCCCACTCTTATCATGAGTCACAACAAAAGCCTTTGTGCGCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATTCCACGCACTGATGTTTTTATAGA
AAAAGACAGCTCCACTAATGAAGACTTAGAGCGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCAGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGACATTTATCCAGCTTATTATGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGCGATGAGCTTGATGCTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGTGTAGGTGAAACAAGACTAAAACAAGCGATAAAAGACATAAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGCGTTGAAAATTATGCAAGACATTTAACAGGGCTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACTTTGGTAGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTTAGCAAAGAAAACATCTTTCATCAAATCATGCGTCCTACGGGACTGCTTGATCCTTTAATAGAGTTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACTGTAC
TGACTAAAAAACTCGCTGAAGAGCTTACAAGGTATTATTTAGAGCTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAGATTACAAAATCT
ATGCAAGAAGCTATGGATACTACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATCACGCCAAC
TTCAGTCAAACGCCATATTGAAGAAAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCAGCTAGCGAAAGAGCAAAACTTGTCAAAGAGTTAAGAAAACAAATGCTTGAAGCAGCTAAAGCACTTGAG
TTTGAAAAAGCTGCTGCTATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Type III restriction enzyme, res subunit (ResIII)

(8-116)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

Ultra-violet resistance protein B (UvrB)

(552-593)

UvrB interaction domain (UvrB_inter)

(158-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502