Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KGD89_RS17285 Genome accession   NZ_CP074349
Coordinates   4133185..4135401 (-) Length   738 a.a.
NCBI ID   WP_025261024.1    Uniprot ID   -
Organism   Pseudomonas cichorii strain DSM 50259     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4128185..4140401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD89_RS17255 (KGD89_17255) murB 4128988..4130007 (-) 1020 WP_025261018.1 UDP-N-acetylmuramate dehydrogenase -
  KGD89_RS17260 (KGD89_17260) kdsB 4130042..4130806 (-) 765 WP_025261019.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KGD89_RS17265 (KGD89_17265) - 4130803..4130988 (-) 186 WP_025261020.1 Trm112 family protein -
  KGD89_RS17270 (KGD89_17270) lpxK 4131006..4132001 (-) 996 WP_025261021.1 tetraacyldisaccharide 4'-kinase -
  KGD89_RS17275 (KGD89_17275) - 4132001..4132432 (-) 432 WP_025261022.1 biopolymer transporter ExbD -
  KGD89_RS17280 (KGD89_17280) exbB 4132429..4133103 (-) 675 WP_025261023.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KGD89_RS17285 (KGD89_17285) comA 4133185..4135401 (-) 2217 WP_025261024.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KGD89_RS17290 (KGD89_17290) - 4135668..4136456 (-) 789 WP_025261025.1 ABC transporter permease -
  KGD89_RS17295 (KGD89_17295) - 4136453..4137385 (-) 933 WP_025261026.1 ABC transporter ATP-binding protein -
  KGD89_RS17300 (KGD89_17300) - 4137549..4138172 (-) 624 WP_025261027.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80836.51 Da        Isoelectric Point: 10.0130

>NTDB_id=564124 KGD89_RS17285 WP_025261024.1 4133185..4135401(-) (comA) [Pseudomonas cichorii strain DSM 50259]
MRTGMIALALGLLALRFLPVLPPVWLLLLMPVLALMLLPFRTYPVALFLFGLTWACVSAKSALDDRLLPRLDGQTLWLQG
KVVGLPGAAEGVVRFELEDATSRRARLPQLLRVAWYGGPEVRSGERWKLAVKLKRPAGLVNPDAFDYQAWLLAQRIGATG
TVVDGQLLTPARAAWRDGIRQRLLAVEAHGREGGLAALVLGDGSGLSTSDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARRGLWPRFLPWLPWACGLAFGAALGYGLLAGFDVPVRRACVMVAMVLLWRLRFRHLGLLLPLLMSLNLVLIFEPL
VSLQPGFWLSFSAVAILILIFGGRLGAWGWWQSWTRAQWLIAIGLLPMLLALNLPVSISGPLANLLAVPWVSLIVLPPAL
LGTLLLPVPVIGEGLLWLAGAALEGLFVVLGWIADVRPAWLPSTVPVWAWAMSLLGALLLLMPQGMPMRLLGWPLLLLCV
FPPLKSVPHGQVEVLQLDVGQGLAILLRTRHHTLLYDAGPRFGEFDIGQRVVLPAIRKAGVRKLDLMLLSHADADHAGGA
LAVHGALPVLRVLGGELARLDPRLDAQLCRNDETWEWDGVRFATWRWEQAEEGNQSSCMLSVEAMGERLLLTGDIDVEAE
QAAINSDFDLRAHWLQAPHHGSRTSSSKLFLRAVAPVGVLISRGRNNAFGHPHPRVMARYRWHGIKSYDSAELGAVGLQL
GTFGQPRAERGEQRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=564124 KGD89_RS17285 WP_025261024.1 4133185..4135401(-) (comA) [Pseudomonas cichorii strain DSM 50259]
ATGCGCACAGGGATGATCGCGCTTGCTCTGGGTCTGTTGGCCCTGCGTTTTTTGCCCGTGTTGCCTCCGGTATGGCTATT
GCTGCTGATGCCGGTGTTGGCGTTGATGCTGTTGCCGTTTCGCACTTATCCAGTGGCACTTTTTCTGTTTGGACTCACCT
GGGCCTGTGTGTCGGCAAAGTCGGCGCTGGACGATCGTCTGTTGCCGCGCCTCGACGGGCAGACCTTGTGGCTGCAAGGC
AAGGTGGTCGGTTTGCCGGGTGCTGCCGAAGGCGTGGTGCGTTTTGAGCTGGAGGATGCAACATCACGGCGGGCCAGGTT
GCCGCAACTACTGCGTGTGGCCTGGTATGGCGGCCCCGAAGTGCGCAGCGGCGAGCGCTGGAAGCTTGCGGTCAAGCTCA
AGCGTCCTGCCGGGCTGGTCAACCCCGATGCGTTCGATTATCAGGCCTGGTTGCTGGCCCAGCGCATTGGCGCTACCGGC
ACGGTGGTGGACGGGCAGTTGCTGACACCCGCACGCGCTGCATGGCGTGACGGGATTCGGCAGCGCCTGCTGGCGGTCGA
AGCCCATGGTCGTGAAGGCGGGCTGGCGGCGCTGGTGCTGGGCGACGGCTCGGGCCTCTCGACTTCCGACTGGCAGGTGC
TGCAGGACACCGGCACCGTGCATCTTCTGGTGATATCCGGCCAGCATATCGGTCTGTTGGCTGGTGTGGTCTATCTGCTG
ATCGCGGGGCTGGCTCGCCGGGGATTATGGCCGCGCTTTCTGCCCTGGCTGCCGTGGGCCTGCGGTCTGGCATTCGGGGC
TGCGCTGGGGTATGGCCTGCTGGCCGGGTTCGATGTGCCGGTGCGTCGGGCTTGTGTGATGGTCGCGATGGTGCTGCTCT
GGCGTTTGCGCTTTCGGCATCTCGGGCTGCTCTTGCCACTGTTGATGTCGCTCAATCTGGTCCTGATCTTCGAGCCTCTG
GTCAGTTTGCAGCCGGGCTTCTGGCTGTCGTTCTCGGCGGTGGCGATTCTGATCCTGATCTTCGGCGGGCGTCTCGGTGC
CTGGGGTTGGTGGCAGAGCTGGACGCGGGCTCAATGGTTGATCGCCATTGGTCTTCTGCCGATGCTGCTGGCCTTGAATC
TGCCGGTCAGCATCAGTGGCCCGCTGGCCAATCTGCTGGCGGTGCCCTGGGTCAGCCTGATCGTATTACCTCCCGCATTA
CTTGGGACGCTGCTGTTGCCCGTCCCAGTGATTGGCGAAGGCCTGCTCTGGCTGGCCGGTGCTGCGCTGGAAGGCTTGTT
CGTTGTTCTGGGCTGGATTGCCGATGTCCGGCCTGCCTGGCTGCCAAGCACAGTGCCAGTCTGGGCCTGGGCCATGAGCC
TGCTGGGCGCTCTGCTGTTATTAATGCCCCAGGGCATGCCCATGCGTCTGTTGGGTTGGCCACTGTTATTGCTGTGCGTT
TTCCCGCCGCTCAAATCGGTGCCCCACGGGCAGGTCGAGGTGCTTCAACTGGATGTCGGGCAAGGGCTGGCGATTCTCTT
GCGCACCCGCCATCACACGCTGCTGTATGACGCCGGGCCGCGTTTCGGGGAGTTCGATATCGGCCAGCGGGTGGTGCTGC
CCGCGATTCGCAAAGCCGGCGTGCGCAAGCTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGTGCG
CTGGCGGTACATGGCGCACTGCCGGTTCTTCGGGTCCTGGGTGGTGAGCTGGCAAGGCTTGATCCCCGACTTGATGCCCA
ACTGTGTCGCAACGATGAAACCTGGGAATGGGACGGTGTACGGTTTGCGACCTGGCGCTGGGAGCAGGCCGAGGAGGGCA
ATCAGTCGTCCTGCATGCTGAGTGTGGAGGCCATGGGCGAGCGATTGCTGCTGACCGGCGATATCGATGTTGAGGCCGAG
CAGGCTGCGATTAACAGCGATTTCGATCTGCGCGCCCATTGGTTGCAGGCGCCCCATCATGGCAGCCGGACCTCTTCCTC
CAAGCTGTTTCTGCGTGCCGTGGCGCCGGTGGGCGTGCTGATTTCCCGTGGACGCAACAATGCCTTCGGGCATCCTCATC
CACGGGTGATGGCGCGTTATCGATGGCACGGGATCAAGAGCTACGACAGTGCCGAGCTGGGTGCTGTCGGGCTGCAACTG
GGGACTTTCGGCCAACCCCGGGCAGAGCGGGGCGAGCAGCGCTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.709

97.019

0.608
  comA Ralstonia pseudosolanacearum GMI1000

32.809

100

0.367