Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KGD89_RS17280 Genome accession   NZ_CP074349
Coordinates   4132429..4133103 (-) Length   224 a.a.
NCBI ID   WP_025261023.1    Uniprot ID   -
Organism   Pseudomonas cichorii strain DSM 50259     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4127429..4138103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KGD89_RS17255 (KGD89_17255) murB 4128988..4130007 (-) 1020 WP_025261018.1 UDP-N-acetylmuramate dehydrogenase -
  KGD89_RS17260 (KGD89_17260) kdsB 4130042..4130806 (-) 765 WP_025261019.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KGD89_RS17265 (KGD89_17265) - 4130803..4130988 (-) 186 WP_025261020.1 Trm112 family protein -
  KGD89_RS17270 (KGD89_17270) lpxK 4131006..4132001 (-) 996 WP_025261021.1 tetraacyldisaccharide 4'-kinase -
  KGD89_RS17275 (KGD89_17275) - 4132001..4132432 (-) 432 WP_025261022.1 biopolymer transporter ExbD -
  KGD89_RS17280 (KGD89_17280) exbB 4132429..4133103 (-) 675 WP_025261023.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KGD89_RS17285 (KGD89_17285) comA 4133185..4135401 (-) 2217 WP_025261024.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KGD89_RS17290 (KGD89_17290) - 4135668..4136456 (-) 789 WP_025261025.1 ABC transporter permease -
  KGD89_RS17295 (KGD89_17295) - 4136453..4137385 (-) 933 WP_025261026.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24083.32 Da        Isoelectric Point: 7.9111

>NTDB_id=564123 KGD89_RS17280 WP_025261023.1 4132429..4133103(-) (exbB) [Pseudomonas cichorii strain DSM 50259]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDNEKLKLLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGALAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLVDAPVDLKSQARAGGKKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=564123 KGD89_RS17280 WP_025261023.1 4132429..4133103(-) (exbB) [Pseudomonas cichorii strain DSM 50259]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCAT
TGAGCGTCTGTGGACGCTGCGTGCCAGCCGCATCACGCCGCCGCACCTGCTGGGGCAGGTCTGGCAATGGATTCAGGAAA
AGAAACTCGACAACGAAAAGCTCAAGTTACTGCGCGCCGATTCGCCACTGGGTGAAATCCTGGCGGCGGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCACGAGTCATCCATGATCTTGAGCGCTACCT
CAGTGCCCTGGGCTCCATCGCCGCCATGGCTCCCCTATTGGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCG
GTTCGTTCAACAGTTCGGGCGCCACGGCCAATGCCGGTGCGCTGGCTGGCGGTATTTCCAAGGCGCTGATCTGTACGGCA
TCGGGCCTGATCGTCGCGATTCCGGCGATTTTCTTCCATCGTTTCCTGCAAAGCCGAGTCGATGAGCTGGTGGTCGGCAT
GGAGCAACAGGCCATTCGTCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGTGGACGCGCCGGTCGATCTGA
AATCCCAGGCCCGTGCCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.553

91.964

0.75