Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   L2I08_RS23110 Genome accession   NZ_CP091820
Coordinates   5338864..5339937 (+) Length   357 a.a.
NCBI ID   WP_237896752.1    Uniprot ID   -
Organism   Streptomyces sp. NBU3104     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5333864..5344937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS23100 (L2I08_23100) - 5335379..5336641 (+) 1263 WP_003947900.1 FAD-dependent oxidoreductase -
  L2I08_RS23105 (L2I08_23105) dnaG 5336762..5338666 (+) 1905 WP_037842488.1 DNA primase -
  L2I08_RS23110 (L2I08_23110) rpoS 5338864..5339937 (+) 1074 WP_237896752.1 RNA polymerase sigma factor Regulator
  L2I08_RS23115 (L2I08_23115) - 5339954..5340166 (-) 213 WP_237896753.1 hypothetical protein -
  L2I08_RS23120 (L2I08_23120) rcrQ 5340257..5342173 (-) 1917 WP_015507929.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS23125 (L2I08_23125) rcrP 5342173..5343906 (-) 1734 WP_015507928.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38822.45 Da        Isoelectric Point: 10.3526

>NTDB_id=563588 L2I08_RS23110 WP_237896752.1 5338864..5339937(+) (rpoS) [Streptomyces sp. NBU3104]
MQTRPPRSAPTTPPAVLAPAVPTPRRSPQRAPAGGAGTGPQGAGGRVPAGSEQAGAAAPDLFRQYLREIGRIPLLSAADE
VELARRVEAGVFAAAKLAGGCADAGLARDLRRLVVLGERAKGRLIEANLRLVVSVAKRYTGRGLTMLDLVQEGNLGLIRA
VEKFDYTRGFKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRTQRALLQEAGREPAAEEVGERLGLSAEKVE
EVLRLAREPISLHAPVGGEDDVFLGDLIEDADAASPAESAALLLLRQHLDAVLATLGDRERQVVQLRYGFDDGRPRTLEE
IGRLFGVTRERVRQIESKTLRRLREHTAAGQLRGYLE

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=563588 L2I08_RS23110 WP_237896752.1 5338864..5339937(+) (rpoS) [Streptomyces sp. NBU3104]
GTGCAGACCAGGCCCCCTCGCTCCGCCCCCACCACTCCGCCCGCGGTCCTCGCCCCGGCCGTCCCCACCCCGCGCAGGTC
GCCCCAGCGGGCCCCGGCCGGCGGAGCCGGGACCGGGCCGCAGGGCGCGGGCGGGCGGGTACCGGCCGGATCCGAGCAGG
CGGGGGCGGCCGCCCCCGACCTCTTCCGGCAGTACCTCCGGGAGATCGGGCGCATCCCGCTGCTCTCGGCCGCCGACGAG
GTGGAGCTGGCCCGGCGCGTCGAGGCGGGCGTGTTCGCCGCGGCGAAGCTCGCCGGGGGCTGCGCGGACGCCGGTCTCGC
CCGGGACCTGCGGCGGCTGGTGGTCCTCGGGGAGCGGGCCAAGGGGCGGCTCATCGAGGCCAACCTGCGGCTCGTCGTCT
CGGTCGCCAAGCGGTACACGGGCCGCGGCCTGACCATGCTCGACCTGGTGCAGGAGGGCAATCTCGGGCTGATCCGCGCG
GTGGAGAAGTTCGACTACACCCGGGGCTTCAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGCGC
CCTCGCCGACCAGGCCCGCACCATCCGGGTGCCGGTGCACGTCGTGGAGCTGATCAACCGGGTCGTGCGCACCCAGCGCG
CCCTGCTCCAGGAGGCGGGGCGCGAGCCGGCCGCCGAGGAGGTCGGTGAGCGGCTCGGGCTGAGCGCCGAGAAGGTCGAG
GAGGTGCTGCGGCTGGCCCGCGAACCCATCTCCCTGCACGCGCCGGTCGGCGGCGAGGACGACGTCTTCCTCGGCGACCT
CATCGAGGACGCCGACGCGGCCTCCCCCGCCGAGAGCGCCGCCCTGCTCCTGCTCCGCCAGCACCTCGACGCGGTCCTCG
CCACCCTCGGCGACCGCGAACGCCAGGTGGTGCAGTTGCGGTACGGGTTCGACGACGGGCGGCCGCGCACCCTGGAGGAG
ATCGGCCGGCTCTTCGGGGTCACCCGCGAACGGGTCCGCCAGATCGAGTCGAAGACGCTGCGCCGGCTCCGGGAGCACAC
GGCGGCGGGGCAGTTGCGGGGCTATCTGGAGTGA

Domains

Predicted by InterProScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(60-93)

Sigma-70 region 3 (Sigma70_r3)

(203-279)

Sigma-70 region 2 (Sigma70_r2)

(124-193)

Sigma-70, region 4 (Sigma70_r4)

(292-345)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.863

81.793

0.367