Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   L2I08_RS23125 Genome accession   NZ_CP091820
Coordinates   5342173..5343906 (-) Length   577 a.a.
NCBI ID   WP_015507928.1    Uniprot ID   A0ABR4SBQ5
Organism   Streptomyces sp. NBU3104     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5337173..5348906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS23110 (L2I08_23110) rpoS 5338864..5339937 (+) 1074 WP_237896752.1 RNA polymerase sigma factor Regulator
  L2I08_RS23115 (L2I08_23115) - 5339954..5340166 (-) 213 WP_237896753.1 hypothetical protein -
  L2I08_RS23120 (L2I08_23120) rcrQ 5340257..5342173 (-) 1917 WP_015507929.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS23125 (L2I08_23125) rcrP 5342173..5343906 (-) 1734 WP_015507928.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS23130 (L2I08_23130) - 5344041..5345495 (-) 1455 WP_078503803.1 FGGY family carbohydrate kinase -
  L2I08_RS23135 (L2I08_23135) - 5345585..5345884 (-) 300 WP_033948503.1 hypothetical protein -
  L2I08_RS23155 (L2I08_23155) - 5346594..5347046 (-) 453 WP_003947908.1 hypothetical protein -
  L2I08_RS23160 (L2I08_23160) - 5347126..5348010 (-) 885 WP_237896754.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62587.86 Da        Isoelectric Point: 5.6287

>NTDB_id=563590 L2I08_RS23125 WP_015507928.1 5342173..5343906(-) (rcrP) [Streptomyces sp. NBU3104]
MLIRLLRTYLRPYQKPIALVMVLQLLQTCAALYLPSLNADIIDRGVVRGDTGVILGLGAVMLAVTLVQMAGNIGAVYFGA
RTAAALGRDVRAAVFDRVQSFSARELNGFGAPSLITRTTNDVQQVQMLALMTFTLMVTAPIMCVGGVIMALGQDVPLSGV
LLAVLPVMAASVGVVVWRLRPLFRSMQKRLDTVNRVLREQITGNRVIRAFVRDRYETERFGRANTDLTEVSLGTGRLLAL
MFPLVMLVVNLSSLAVVWFGAHRIDSGAMEIGSLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLGTSSSVVP
PAEPVRELAGRGTLEMRAAGFRYPGAEEWVLRDVELFAGPGETTAVIGSTGSGKTTLLGLAARLIDPVEGEVLVDGVDIR
RIDPALLARTVGLVPQKPYLFSGTVASNLRYGNPEASDEELWHALEVAQAKEFVERLEGGLEAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALRAETAEAGVVIVAQRVSTIRDADRIVVLDEGRVVAVGRHHDLMERD
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=563590 L2I08_RS23125 WP_015507928.1 5342173..5343906(-) (rcrP) [Streptomyces sp. NBU3104]
GTGCTCATACGACTCCTGCGGACGTATCTGCGTCCGTACCAGAAACCCATCGCGCTGGTGATGGTGCTCCAACTGCTCCA
GACCTGCGCGGCCCTGTACCTTCCGTCGCTCAACGCGGACATCATCGACCGGGGCGTCGTGCGGGGCGACACGGGCGTCA
TCCTCGGGCTCGGCGCCGTCATGCTGGCGGTCACGCTGGTGCAGATGGCGGGCAACATCGGCGCCGTCTACTTCGGCGCC
CGGACCGCCGCCGCCCTCGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCACGGGAGCTGAA
CGGCTTCGGGGCACCGTCCCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACCTTCA
CGCTGATGGTGACGGCGCCCATCATGTGCGTGGGCGGCGTGATCATGGCGCTGGGCCAGGACGTACCGCTCTCCGGGGTG
CTGCTGGCGGTGCTGCCCGTGATGGCGGCCTCGGTCGGCGTGGTCGTCTGGCGGCTGCGGCCGCTCTTCCGCTCCATGCA
GAAGCGGCTGGACACCGTCAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGCGACC
GGTACGAGACCGAGCGGTTCGGCCGGGCCAACACCGACCTGACCGAGGTCTCGCTGGGCACCGGTCGGCTGCTGGCGCTG
ATGTTCCCGCTGGTGATGCTGGTGGTGAACCTGTCCTCGCTGGCCGTGGTCTGGTTCGGCGCCCACCGGATCGACAGCGG
CGCGATGGAGATCGGCTCGCTCACCGCCTTCCTCGCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCGACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTGCTGGGGACGAGCAGCAGCGTCGTCCCG
CCCGCCGAGCCGGTCCGCGAACTGGCCGGCCGGGGCACGCTGGAGATGCGGGCCGCGGGGTTCCGCTACCCGGGCGCCGA
GGAGTGGGTCCTGCGCGACGTGGAGCTGTTCGCCGGGCCCGGCGAGACCACCGCCGTCATCGGCTCGACCGGCTCCGGCA
AGACCACCCTGCTCGGCCTCGCCGCCCGGCTGATCGACCCCGTCGAGGGCGAGGTGCTGGTCGACGGCGTCGACATCCGC
CGGATCGACCCGGCGCTGCTGGCCCGCACCGTCGGCCTCGTCCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTGGCGAG
CAACCTGCGGTACGGCAACCCGGAGGCGAGTGACGAGGAGCTGTGGCACGCGCTGGAAGTGGCGCAGGCCAAGGAGTTCG
TCGAGCGGCTGGAAGGCGGGCTGGAGGCTCCCGTCTCGCAGGGCGGGACCAACGTCTCGGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACCCTGGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCGTTCTCGGCACTGGACTACGCGACCGA
CGCGGCGCTGCGGGCAGCCCTGCGCGCGGAGACCGCCGAGGCGGGCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTGGTGGCGGTCGGCCGCCACCACGACCTGATGGAACGGGAC
GAGACCTACCGGGAGATTGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.287

99.133

0.38