Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   L2I08_RS23120 Genome accession   NZ_CP091820
Coordinates   5340257..5342173 (-) Length   638 a.a.
NCBI ID   WP_015507929.1    Uniprot ID   A0ABR4SBP3
Organism   Streptomyces sp. NBU3104     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5335257..5347173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS23100 (L2I08_23100) - 5335379..5336641 (+) 1263 WP_003947900.1 FAD-dependent oxidoreductase -
  L2I08_RS23105 (L2I08_23105) dnaG 5336762..5338666 (+) 1905 WP_037842488.1 DNA primase -
  L2I08_RS23110 (L2I08_23110) rpoS 5338864..5339937 (+) 1074 WP_237896752.1 RNA polymerase sigma factor Regulator
  L2I08_RS23115 (L2I08_23115) - 5339954..5340166 (-) 213 WP_237896753.1 hypothetical protein -
  L2I08_RS23120 (L2I08_23120) rcrQ 5340257..5342173 (-) 1917 WP_015507929.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS23125 (L2I08_23125) rcrP 5342173..5343906 (-) 1734 WP_015507928.1 ABC transporter ATP-binding protein Regulator
  L2I08_RS23130 (L2I08_23130) - 5344041..5345495 (-) 1455 WP_078503803.1 FGGY family carbohydrate kinase -
  L2I08_RS23135 (L2I08_23135) - 5345585..5345884 (-) 300 WP_033948503.1 hypothetical protein -
  L2I08_RS23155 (L2I08_23155) - 5346594..5347046 (-) 453 WP_003947908.1 hypothetical protein -

Sequence

Protein


Download         Length: 638 a.a.        Molecular weight: 68783.83 Da        Isoelectric Point: 4.8614

>NTDB_id=563589 L2I08_RS23120 WP_015507929.1 5340257..5342173(-) (rcrQ) [Streptomyces sp. NBU3104]
MAGPMGAGAPGQQSMDFKGSGKRLLAQFRPEKKVLWAMLATGLVSVALSVTGPKILGWATDLVFAGIVGRDMPAGATREQ
VLAGMREGGDDGVADMLSGMDFTPGQGIDFGAVGEVLLLALGVFLLASALMAVSARLSNRAINRTVFRMRRDVQTKLSRL
PLSYFDQRQRGEVLSRATNDIDNIGQTLQQTMGQVVNSLLTVIGVLVMMFWISPLLALVALVTVPLSFVVATRVGKRSQP
HFVSQWSSTGTLNAHIEEMYTGHSLVKVFGRQDESAERFAEENDALYQASFKAQFTSGIMQPLMMFVSNFNYVLVAVVGG
LRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDADEQEPDPVPGARLEKPLGRVALEKVSF
RYEPDRPLIEDLSLTVEPGRTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVEIAAMAREDLRSRIGMVLQDTWLFG
GTIAENIAYGASREVSREEVEEAARAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLVTIARAFLSDPVILVLDEATSS
VDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGSHTELLAAEGAYARLYAAQFAEAAVEVD

Nucleotide


Download         Length: 1917 bp        

>NTDB_id=563589 L2I08_RS23120 WP_015507929.1 5340257..5342173(-) (rcrQ) [Streptomyces sp. NBU3104]
ATGGCGGGCCCGATGGGCGCGGGAGCGCCGGGACAGCAGTCGATGGACTTCAAGGGTTCGGGCAAGCGGCTGCTGGCCCA
GTTCCGCCCCGAGAAGAAGGTGCTGTGGGCGATGCTCGCCACCGGCCTGGTCAGCGTGGCGCTCTCGGTGACCGGCCCGA
AGATCCTCGGCTGGGCCACCGACCTGGTCTTCGCGGGCATCGTCGGCCGCGACATGCCGGCCGGCGCCACCCGCGAGCAG
GTGCTGGCGGGGATGCGCGAGGGCGGCGACGACGGCGTGGCCGACATGCTCTCCGGGATGGACTTCACTCCCGGCCAGGG
CATCGACTTCGGTGCCGTCGGCGAGGTGCTGCTGCTGGCCCTCGGCGTCTTCCTGCTGGCCAGCGCCCTGATGGCGGTCT
CGGCCCGGCTGAGCAACCGCGCGATCAACCGCACCGTCTTCCGGATGCGCCGCGACGTGCAGACCAAGCTGTCGCGGCTC
CCGCTCTCCTACTTCGACCAGCGCCAGCGCGGCGAGGTGCTCAGCCGCGCCACCAACGACATCGACAACATCGGCCAGAC
GCTCCAGCAGACGATGGGCCAGGTGGTCAACTCGCTGCTGACCGTCATCGGTGTGCTGGTGATGATGTTCTGGATATCGC
CGCTGCTCGCCCTGGTGGCGCTGGTGACGGTGCCGCTCTCCTTCGTGGTCGCCACCCGGGTCGGCAAGCGCTCCCAGCCG
CACTTCGTCAGCCAGTGGTCCTCCACGGGCACGCTCAACGCCCACATCGAGGAGATGTACACCGGCCACAGCCTGGTCAA
GGTCTTCGGCCGCCAGGACGAGTCGGCCGAGCGGTTCGCCGAGGAGAACGACGCGCTCTACCAGGCGTCCTTCAAGGCCC
AGTTCACCAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACTTCAACTACGTGCTGGTCGCCGTCGTCGGCGGC
CTCCGGGTCGCCTCGGGCGCCCTGTCCATCGGCGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTTCTCGATGCCGCT
GACCCAGGTCGCCTCGATGGCCAACCTGGTGCAGTCCGGCGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCG
ACGAGCAGGAGCCCGACCCGGTCCCCGGCGCCCGCCTGGAGAAGCCGCTGGGCCGCGTCGCCCTGGAGAAGGTCTCCTTC
CGCTACGAGCCGGACCGGCCCCTGATCGAGGACCTCTCCCTGACCGTCGAGCCGGGCCGCACGGTCGCCATCGTCGGCCC
GACCGGCGCCGGCAAGACCACCCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACCGGCGGCCGGATCACCCTGGACG
GCGTCGAGATCGCCGCCATGGCCCGGGAGGACCTGCGCTCCCGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGC
GGCACCATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTCAGCCGCGAGGAGGTCGAGGAGGCGGCCCGCGCCGC
CCACGCCGACCGCTTCGTCCGCACGCTCCCCGACGGCTACGACACCGTCCTGGACGACGAGGGCAGCGGGGTCAGCGCAG
GGGAGAAGCAGCTCGTCACCATCGCGCGGGCCTTCCTCTCCGACCCGGTGATCCTCGTCCTGGACGAGGCCACCAGCTCG
GTGGACACCCGTACCGAGGTGCTGATCCAGCAGGCCATGGCCCGGCTCGCGCACGGCCGGACCTCCTTCGTCATCGCCCA
CCGCCTCTCCACGATCCGGGACGCCGACACGATCCTGGTGATGGAGAACGGGGCCATCGTCGAGCAGGGCTCGCACACCG
AACTCCTCGCCGCCGAGGGAGCGTACGCCCGCCTCTACGCGGCCCAGTTCGCCGAGGCGGCCGTCGAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(111-347)

ABC transporter (ABC_tran)

(410-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.613

97.179

0.404