Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   L2I08_RS20845 Genome accession   NZ_CP091820
Coordinates   4831105..4833252 (-) Length   715 a.a.
NCBI ID   WP_003947475.1    Uniprot ID   -
Organism   Streptomyces sp. NBU3104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4826105..4838252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2I08_RS20825 (L2I08_20825) aroQ 4826508..4826981 (-) 474 WP_010637092.1 type II 3-dehydroquinate dehydratase -
  L2I08_RS20830 (L2I08_20830) - 4827088..4828101 (-) 1014 WP_030308387.1 TerC family protein -
  L2I08_RS20835 (L2I08_20835) - 4828380..4830233 (-) 1854 WP_237896628.1 TerD family protein -
  L2I08_RS20840 (L2I08_20840) - 4830386..4830964 (-) 579 WP_003947474.1 TerD family protein -
  L2I08_RS20845 (L2I08_20845) uvrB 4831105..4833252 (-) 2148 WP_003947475.1 excinuclease ABC subunit UvrB Machinery gene
  L2I08_RS20850 (L2I08_20850) - 4833292..4834227 (-) 936 WP_008405237.1 MHYT domain-containing protein -
  L2I08_RS20855 (L2I08_20855) - 4834599..4835540 (+) 942 WP_030767779.1 glycerophosphodiester phosphodiesterase family protein -
  L2I08_RS20860 (L2I08_20860) - 4835575..4836135 (+) 561 WP_018895216.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  L2I08_RS20865 (L2I08_20865) - 4836185..4837561 (+) 1377 WP_018470539.1 MFS transporter -
  L2I08_RS20870 (L2I08_20870) - 4837507..4838004 (-) 498 WP_003947481.1 VOC family protein -

Sequence

Protein


Download         Length: 715 a.a.        Molecular weight: 80328.04 Da        Isoelectric Point: 4.8554

>NTDB_id=563583 L2I08_RS20845 WP_003947475.1 4831105..4833252(-) (uvrB) [Streptomyces sp. NBU3104]
MRPVSKIERTVAPFEVVSPYQPSGDQPAAIADLDRRVRAGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDALLRRFVEIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIETLTTLHPLTG
EIISDEQQLYVFPASHYVAGPERMERAVNDIEQELGERLTVLEKQGKLLEAQRLRMRTTYDIEMLRQIGSCSGIENYSMH
FDGREPGTPPHTLLDYFPEDFLLVIDESHVTVPQIGAMHEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERVGQTVYL
SATPGNYELSRSDGFVEQIIRPTGLVDPEVVVKPTEGQIDDLVHEIRTRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRVELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADRITPAMEKAIDETNRRREKQIAYNTENGIDPQPLRKKINDIVATIAREDVDTEALLGTGYRQTKDGKAKAPVPDLGGG
YDAPKAAKGGKKAAKKAAGTPTDRPAAELAGQIEEMTNRMRAAAADLQFEVAARLRDEVGEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2148 bp        

>NTDB_id=563583 L2I08_RS20845 WP_003947475.1 4831105..4833252(-) (uvrB) [Streptomyces sp. NBU3104]
ATGCGGCCTGTATCGAAGATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGCGACCAGCC
CGCAGCCATCGCCGACCTGGACCGCCGGGTCCGCGCCGGTGAGAAGGACGTCGTCCTGCTCGGCGCCACCGGTACCGGCA
AGTCCGCCACCACCGCCTGGATGATCGAGAAGCTCCAGCGCCCCACCCTGGTGATGGCCCCCAACAAGACCCTCGCCGCG
CAGCTCGCCAACGAGTTCCGCGAGCTCCTCCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGCCACT
CCGCGACCAACTCGCTCCTCACCCGCCGCGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGTCTGGGCACCCCG
CAGGAGTACGTCGACCGGATGGTCCCCCTCAAGGTCGGCGAGGAGATCGACCGCGACGCCCTGCTGCGCCGCTTCGTCGA
GATCCAGTACACCCGCAACGACCTCGCCTTCACCCGCGGCACCTTCCGCGTCCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTGGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGACGCTGACCACCCTCCACCCGCTCACCGGC
GAGATCATCAGCGACGAGCAGCAGCTCTACGTCTTCCCCGCCTCGCACTACGTCGCGGGCCCCGAGCGCATGGAGCGCGC
GGTCAACGACATCGAGCAGGAGCTGGGCGAGCGGCTCACCGTCCTGGAGAAGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGGATGCGCACCACCTACGACATCGAGATGCTCCGCCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCGATGCAC
TTCGACGGCCGCGAGCCCGGCACCCCGCCGCACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTGGTCATCGACGA
GTCGCACGTCACCGTCCCGCAGATCGGCGCGATGCACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTCCCCTCCGCCCTGGACAACCGCCCCCTGAAGTGGGAGGAGTTCCAGGAGCGGGTCGGCCAGACGGTCTACCTC
TCGGCGACCCCGGGCAACTACGAGCTGTCCCGCTCCGACGGCTTCGTCGAGCAGATCATCCGCCCCACCGGCCTCGTCGA
CCCGGAGGTCGTCGTCAAGCCCACCGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCACCCGCACCGAGAAGGACG
AGCGGGTCCTCGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAACTCGGCATCCAGGTC
CGCTACCTCCACAGCGACGTCGACACCCTGCGCCGCGTCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTCCTCCGCGAGGGGCTCGACCTGCCCGAGGTCTCCCTGGTCGCCATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCGGGCACCTCCCTGATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCGGGCCAGGTCCACATGTAC
GCGGACCGGATCACCCCGGCGATGGAGAAGGCCATCGACGAGACCAACCGGCGCCGCGAGAAGCAGATCGCCTACAACAC
CGAGAACGGCATCGACCCGCAGCCGCTCCGCAAGAAGATCAACGACATCGTCGCCACCATCGCCCGCGAGGACGTCGACA
CCGAGGCCCTGCTGGGCACCGGCTACCGCCAGACGAAGGACGGCAAGGCCAAGGCCCCCGTCCCGGACCTCGGCGGCGGG
TACGACGCCCCGAAGGCGGCCAAGGGCGGCAAGAAGGCGGCCAAGAAGGCCGCCGGCACGCCCACCGACCGCCCGGCGGC
CGAGCTGGCCGGGCAGATCGAGGAGATGACCAACCGGATGCGCGCCGCCGCCGCCGACCTCCAGTTCGAGGTCGCCGCCC
GGCTGCGCGACGAGGTCGGCGAGATGAAGAAGGAGCTGCGGCAGATGAAGGAGGCCGGCCTCGCCTGA

Domains

Predicted by InterProScan.

UvrB interaction domain (UvrB_inter)

(169-257)

Helicase conserved C-terminal domain (Helicase_C)

(441-551)

UvrB/uvrC motif (UVR)

(672-704)

Ultra-violet resistance protein B (UvrB)

(559-600)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

62.029

85.455

0.53
  uvrB Streptococcus pneumoniae R6

62.029

85.455

0.53
  uvrB Streptococcus pneumoniae D39

62.029

85.455

0.53