Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L6L68_RS17405 Genome accession   NZ_CP091673
Coordinates   3374332..3375069 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain KKo009     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3369332..3380069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6L68_RS17390 (L6L68_17390) clpC 3369786..3372359 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  L6L68_RS17395 (L6L68_17395) yfiH 3372489..3373220 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  L6L68_RS17400 (L6L68_17400) rluD 3373217..3374197 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L6L68_RS17405 (L6L68_17405) comL 3374332..3375069 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  L6L68_RS17410 (L6L68_17410) insG 3375173..3376520 (+) 1348 Protein_3186 IS4-like element IS4 family transposase -
  L6L68_RS17415 (L6L68_17415) raiA 3376781..3377122 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  L6L68_RS17420 (L6L68_17420) pheL 3377226..3377273 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  L6L68_RS17425 (L6L68_17425) pheA 3377372..3378532 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  L6L68_RS17430 (L6L68_17430) tyrA 3378575..3379696 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=562715 L6L68_RS17405 WP_000197684.1 3374332..3375069(+) (comL) [Escherichia coli strain KKo009]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=562715 L6L68_RS17405 WP_000197684.1 3374332..3375069(+) (comL) [Escherichia coli strain KKo009]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384