Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | KFU86_RS07605 | Genome accession | NZ_CP073996 |
| Coordinates | 1554936..1555442 (+) | Length | 168 a.a. |
| NCBI ID | WP_000168274.1 | Uniprot ID | A0A9X0Q0X8 |
| Organism | Escherichia coli strain PM7 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1522165..1558373 | 1554936..1555442 | within | 0 |
Gene organization within MGE regions
Location: 1522165..1558373
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KFU86_RS07385 (KFU86_07355) | intS | 1522165..1523322 (+) | 1158 | WP_257181885.1 | prophage integrase IntS | - |
| KFU86_RS07390 (KFU86_07360) | - | 1523322..1523468 (-) | 147 | Protein_1455 | transposase | - |
| KFU86_RS07395 | - | 1523856..1526021 (-) | 2166 | WP_257181886.1 | phage head-binding domain-containing protein | - |
| KFU86_RS07400 (KFU86_07370) | - | 1526434..1526694 (+) | 261 | WP_072854989.1 | Arc family DNA-binding protein | - |
| KFU86_RS07405 | - | 1527729..1528790 (-) | 1062 | Protein_1458 | lytic transglycosylase domain-containing protein | - |
| KFU86_RS07410 (KFU86_07380) | - | 1529015..1530403 (-) | 1389 | WP_257180954.1 | DNA transfer protein | - |
| KFU86_RS07415 (KFU86_07385) | - | 1530413..1531105 (-) | 693 | WP_257180955.1 | DNA transfer protein | - |
| KFU86_RS07420 (KFU86_07390) | - | 1531108..1531563 (-) | 456 | WP_069905687.1 | DUF2824 family protein | - |
| KFU86_RS07425 (KFU86_07395) | - | 1531563..1532264 (-) | 702 | WP_220417642.1 | phage tail protein | - |
| KFU86_RS07430 (KFU86_07400) | - | 1532264..1533682 (-) | 1419 | WP_257180956.1 | packaged DNA stabilization protein gp10 | - |
| KFU86_RS07435 (KFU86_07405) | - | 1533692..1534153 (-) | 462 | WP_001140510.1 | packaged DNA stabilization gp4 family protein | - |
| KFU86_RS07440 (KFU86_07410) | - | 1534134..1534322 (-) | 189 | WP_001462613.1 | hypothetical protein | - |
| KFU86_RS07445 (KFU86_07415) | - | 1534364..1535617 (-) | 1254 | WP_016248918.1 | P22 phage major capsid protein family protein | - |
| KFU86_RS07450 (KFU86_07420) | - | 1535636..1536529 (-) | 894 | WP_112026415.1 | scaffolding protein | - |
| KFU86_RS07455 (KFU86_07425) | - | 1536620..1538818 (-) | 2199 | WP_074014737.1 | portal protein | - |
| KFU86_RS07460 (KFU86_07430) | - | 1538820..1540235 (-) | 1416 | WP_088543483.1 | PBSX family phage terminase large subunit | - |
| KFU86_RS07465 (KFU86_07435) | - | 1540232..1540672 (-) | 441 | WP_000113732.1 | hypothetical protein | - |
| KFU86_RS07470 (KFU86_07440) | - | 1540675..1540917 (-) | 243 | WP_000807788.1 | DUF2560 family protein | - |
| KFU86_RS07475 (KFU86_07445) | - | 1541212..1541730 (-) | 519 | WP_001016386.1 | Rha family transcriptional regulator | - |
| KFU86_RS07480 (KFU86_07450) | - | 1541932..1542084 (-) | 153 | WP_089577931.1 | hypothetical protein | - |
| KFU86_RS07485 (KFU86_07455) | - | 1542072..1542539 (-) | 468 | WP_219374378.1 | lysis protein | - |
| KFU86_RS07490 (KFU86_07460) | - | 1542536..1543012 (-) | 477 | WP_000229390.1 | glycoside hydrolase family protein | - |
| KFU86_RS07495 (KFU86_07465) | - | 1542996..1543319 (-) | 324 | WP_000783734.1 | phage holin, lambda family | - |
| KFU86_RS07500 (KFU86_07470) | - | 1543996..1544619 (-) | 624 | WP_001235461.1 | antitermination protein | - |
| KFU86_RS07505 (KFU86_07475) | - | 1544616..1545281 (-) | 666 | WP_087530459.1 | serine/threonine protein phosphatase | - |
| KFU86_RS07510 (KFU86_07480) | - | 1545259..1545465 (-) | 207 | WP_000144614.1 | phage NinH family protein | - |
| KFU86_RS07515 (KFU86_07485) | - | 1545462..1546073 (-) | 612 | WP_039022130.1 | recombination protein NinG | - |
| KFU86_RS07520 (KFU86_07490) | - | 1546066..1546242 (-) | 177 | WP_000950975.1 | protein NinF | - |
| KFU86_RS07525 (KFU86_07495) | - | 1546235..1546618 (-) | 384 | WP_000386651.1 | phage protein NinX family protein | - |
| KFU86_RS07530 (KFU86_07500) | - | 1546621..1546797 (-) | 177 | WP_000113772.1 | NinE family protein | - |
| KFU86_RS07535 (KFU86_07505) | ninD | 1546764..1546967 (-) | 204 | WP_306576437.1 | protein NinD | - |
| KFU86_RS07540 (KFU86_07510) | - | 1546934..1547374 (-) | 441 | WP_000736903.1 | recombination protein NinB | - |
| KFU86_RS07545 (KFU86_07515) | - | 1547451..1548887 (-) | 1437 | WP_257180957.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| KFU86_RS07550 (KFU86_07520) | - | 1548877..1549776 (-) | 900 | WP_000065668.1 | hypothetical protein | - |
| KFU86_RS07555 (KFU86_07525) | - | 1549769..1549915 (-) | 147 | WP_000166207.1 | DUF2740 family protein | - |
| KFU86_RS07560 (KFU86_07530) | - | 1549950..1550228 (-) | 279 | WP_021544312.1 | lambda phage CII family protein | - |
| KFU86_RS07565 (KFU86_07535) | - | 1550337..1550522 (-) | 186 | WP_000276886.1 | Cro/CI family transcriptional regulator | - |
| KFU86_RS07570 (KFU86_07540) | - | 1550603..1551253 (+) | 651 | WP_000856967.1 | LexA family transcriptional regulator | - |
| KFU86_RS07575 (KFU86_07545) | - | 1551568..1551840 (+) | 273 | WP_012817806.1 | hypothetical protein | - |
| KFU86_RS07580 (KFU86_07550) | - | 1552124..1552414 (+) | 291 | Protein_1493 | hypothetical protein | - |
| KFU86_RS07585 (KFU86_07555) | - | 1552712..1553680 (+) | 969 | WP_001351814.1 | hypothetical protein | - |
| KFU86_RS07590 (KFU86_07560) | - | 1553705..1553836 (+) | 132 | WP_000638547.1 | protease FtsH-inhibitory lysogeny factor CIII | - |
| KFU86_RS07595 (KFU86_07565) | kil | 1553821..1553973 (+) | 153 | WP_001437213.1 | host cell division inhibitory peptide Kil | - |
| KFU86_RS07600 (KFU86_07570) | - | 1554228..1554935 (+) | 708 | WP_000365280.1 | Rad52/Rad22 family DNA repair protein | - |
| KFU86_RS07605 (KFU86_07575) | ssb | 1554936..1555442 (+) | 507 | WP_000168274.1 | single-stranded DNA-binding protein | Machinery gene |
| KFU86_RS07610 (KFU86_07580) | - | 1555456..1555752 (+) | 297 | WP_087894425.1 | phage anti-RecBCD protein | - |
| KFU86_RS07615 (KFU86_07585) | - | 1555763..1555930 (+) | 168 | WP_001214442.1 | DUF2737 family protein | - |
| KFU86_RS07620 | - | 1555950..1556108 (+) | 159 | Protein_1501 | ead/Ea22-like family protein | - |
| KFU86_RS07625 | - | 1556110..1556235 (+) | 126 | Protein_1502 | DUF550 domain-containing protein | - |
| KFU86_RS23715 | - | 1556287..1556529 (+) | 243 | WP_373693134.1 | dATP/dGTP pyrophosphohydrolase domain-containing protein | - |
| KFU86_RS07635 (KFU86_07595) | - | 1556907..1557149 (+) | 243 | WP_000476264.1 | hypothetical protein | - |
| KFU86_RS07640 (KFU86_07600) | - | 1557127..1557408 (+) | 282 | Protein_1505 | DNA polymerase III subunit theta | - |
| KFU86_RS07645 (KFU86_07605) | - | 1557498..1557665 (+) | 168 | WP_063114571.1 | hypothetical protein | - |
| KFU86_RS07650 (KFU86_07610) | - | 1557693..1558037 (+) | 345 | WP_001281192.1 | hypothetical protein | - |
| KFU86_RS07655 (KFU86_07615) | torI | 1558173..1558373 (+) | 201 | WP_001163428.1 | response regulator inhibitor TorI | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 18731.03 Da Isoelectric Point: 8.4877
>NTDB_id=562714 KFU86_RS07605 WP_000168274.1 1554936..1555442(+) (ssb) [Escherichia coli strain PM7]
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
MASRGVNKVIILGRVGQDPEVRYSPSGTAFANLTIATSEQWRDKNTGEQKELTEWHRVAVSGKLAEVVGQYVKKGDQIYF
EGMLRTRKWKDQSGQDRYTTEVHVGINGVMQMLGGIGDSKQQAASRQSQKPQQQSSPAQHNEPPMDFDDDIPFAPVTLPF
PRHAIHAI
Nucleotide
Download Length: 507 bp
>NTDB_id=562714 KFU86_RS07605 WP_000168274.1 1554936..1555442(+) (ssb) [Escherichia coli strain PM7]
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAGATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
ATGGCAAGCAGAGGCGTAAATAAGGTGATTATCCTTGGTCGGGTAGGACAAGACCCGGAAGTTCGATACTCACCATCAGG
AACAGCGTTCGCTAACCTGACAATAGCCACGTCAGAACAATGGCGAGATAAAAATACTGGCGAGCAAAAGGAATTGACTG
AATGGCATCGTGTTGCTGTATCCGGGAAACTGGCTGAGGTCGTGGGGCAGTATGTGAAAAAAGGTGATCAGATTTATTTC
GAGGGAATGCTGAGAACCAGAAAGTGGAAAGACCAGTCAGGGCAAGACCGTTACACAACCGAGGTTCATGTCGGAATTAA
TGGCGTGATGCAGATGCTTGGCGGCATTGGCGACAGCAAACAACAAGCAGCCAGCAGGCAATCACAGAAGCCACAGCAGC
AATCATCACCAGCACAACACAACGAACCTCCGATGGATTTTGACGACGATATACCCTTTGCACCAGTAACTCTCCCCTTC
CCTCGTCACGCTATTCACGCAATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
62.147 |
100 |
0.655 |
| ssb | Glaesserella parasuis strain SC1401 |
45.856 |
100 |
0.494 |
| ssb | Neisseria meningitidis MC58 |
38.636 |
100 |
0.405 |
| ssb | Neisseria gonorrhoeae MS11 |
38.636 |
100 |
0.405 |