Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KFU90_RS14030 Genome accession   NZ_CP073953
Coordinates   2903171..2903800 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain MB49     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2898171..2908800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU90_RS14015 (KFU90_13945) helD 2898413..2900467 (-) 2055 WP_000420533.1 DNA helicase IV -
  KFU90_RS14020 (KFU90_13950) yccF 2900590..2901036 (+) 447 WP_001261231.1 YccF domain-containing protein -
  KFU90_RS14025 (KFU90_13955) yccS 2901046..2903208 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KFU90_RS14030 (KFU90_13960) sxy/tfoX 2903171..2903800 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KFU90_RS14035 (KFU90_13965) sulA 2904019..2904528 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KFU90_RS14040 (KFU90_13970) ompA 2904885..2905937 (+) 1053 WP_000750419.1 porin OmpA -
  KFU90_RS14045 (KFU90_13975) matP 2906013..2906465 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  KFU90_RS14050 (KFU90_13980) ycbZ 2906651..2908411 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=562503 KFU90_RS14030 WP_000839153.1 2903171..2903800(-) (sxy/tfoX) [Escherichia coli strain MB49]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=562503 KFU90_RS14030 WP_000839153.1 2903171..2903800(-) (sxy/tfoX) [Escherichia coli strain MB49]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1