Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   KFV54_RS11525 Genome accession   NZ_CP073883
Coordinates   2362574..2363935 (+) Length   453 a.a.
NCBI ID   WP_001631036.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain B1287175     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357574..2368935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFV54_RS11500 (KFV54_11510) - 2358152..2360077 (-) 1926 WP_002485723.1 heavy metal translocating P-type ATPase -
  KFV54_RS11505 (KFV54_11515) - 2360407..2360733 (-) 327 WP_000391495.1 metalloregulator ArsR/SmtB family transcription factor -
  KFV54_RS11510 (KFV54_11520) - 2360940..2361299 (+) 360 WP_001631039.1 hypothetical protein -
  KFV54_RS11515 (KFV54_11525) - 2361411..2361749 (-) 339 Protein_2261 recombinase family protein -
  KFV54_RS11520 (KFV54_11530) - 2361758..2362387 (+) 630 Protein_2262 hypothetical protein -
  KFV54_RS11525 (KFV54_11535) ccrA 2362574..2363935 (+) 1362 WP_001631036.1 recombinase family protein Machinery gene
  KFV54_RS11530 (KFV54_11540) ccrB 2363932..2365560 (+) 1629 WP_001631035.1 recombinase family protein Machinery gene
  KFV54_RS11535 (KFV54_11545) - 2366061..2366411 (+) 351 WP_000849672.1 SAUGI family uracil-DNA glycosylase inhibitor -
  KFV54_RS11540 (KFV54_11550) - 2366498..2366809 (+) 312 WP_000700851.1 DUF960 family protein -
  KFV54_RS11545 (KFV54_11555) - 2366824..2367327 (+) 504 WP_012086592.1 DUF1643 domain-containing protein -
  KFV54_RS11550 (KFV54_11560) - 2367625..2367903 (+) 279 WP_012086594.1 hypothetical protein -
  KFV54_RS11555 (KFV54_11565) - 2367910..2368407 (+) 498 WP_012086596.1 hypothetical protein -
  KFV54_RS13635 - 2368463..2368555 (-) 93 Protein_2270 restriction endonuclease -
  KFV54_RS11560 (KFV54_11570) - 2368704..2368835 (+) 132 WP_257473760.1 hypothetical protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 53316.45 Da        Isoelectric Point: 9.8596

>NTDB_id=561900 KFV54_RS11525 WP_001631036.1 2362574..2363935(+) (ccrA) [Staphylococcus epidermidis strain B1287175]
MEEAIAYVRQSTLKQQSLATQKSLIMDTAKQYGWSNVAFYDDKKTGRHTKRSGYQKMVEIITSGKCKVLCCYRLNRLHRN
LKNAIQFFEICKKHHITIISVNDGYFDLSKEFDCFRLNILMSLAEMESNNISEQTKNGIREKAKQGKLITTHAPFGYRYR
KGCFVVQEEEAYTVKSVYRWYLQGLGYKKISQHLDSNPNLIPRKPYQVRNILLNPNYCGRVINKYGTFNDIVPPIIDIDT
FEEAQERRIHKQLNRSNSRNKLKRRIKCPYCQSTLTNLTIKKENYSLRYYVCPKNMNDAYRTCPFKSINAPELESEVLDT
CKKYFEEQSFHKRLNNTILKVLKQQQMKHKETHLTQEQLIEKLAQNRIDVKTFKRLSASCKSEENYSTYSTYQIDDKLKY
VIKNKITLQDIAPFIDCIKITQTKQLQGIYFKNSPLNIVEQSHLITPERNEVI

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=561900 KFV54_RS11525 WP_001631036.1 2362574..2363935(+) (ccrA) [Staphylococcus epidermidis strain B1287175]
ATGGAAGAAGCGATTGCTTATGTACGTCAAAGTACACTCAAACAACAAAGCTTAGCTACTCAAAAATCGCTCATTATGGA
TACCGCTAAGCAATATGGATGGTCTAATGTGGCGTTTTATGATGATAAGAAAACAGGTCGACATACAAAACGTTCAGGTT
ATCAAAAAATGGTAGAAATAATTACGTCTGGAAAATGTAAAGTATTGTGTTGCTATCGCTTGAACCGACTACATCGTAAT
TTGAAAAATGCCATACAATTCTTTGAAATTTGTAAAAAGCATCACATCACAATCATCAGTGTTAACGATGGATATTTTGA
TTTGTCTAAAGAGTTTGATTGCTTTCGTTTGAACATACTTATGAGTCTAGCGGAAATGGAATCAAACAATATCAGCGAAC
AAACAAAAAATGGGATTAGAGAAAAAGCCAAACAAGGTAAGCTAATCACAACTCATGCTCCGTTTGGCTATCGTTATAGA
AAAGGTTGTTTTGTTGTACAAGAAGAAGAAGCGTATACAGTTAAATCGGTTTATCGCTGGTACTTACAAGGTCTAGGCTA
CAAAAAGATTTCCCAACATTTGGATAGTAATCCTAACCTTATTCCTCGTAAGCCCTATCAAGTTAGAAATATTCTCTTGA
ACCCTAACTATTGCGGTCGTGTCATCAATAAATATGGCACGTTTAATGATATCGTTCCACCTATTATTGATATTGATACA
TTTGAAGAAGCACAAGAGCGTCGTATTCATAAACAACTCAATCGATCCAATTCTAGAAATAAGCTAAAGCGACGAATCAA
ATGTCCTTACTGTCAATCAACATTAACAAACTTAACGATAAAAAAAGAGAACTATTCTCTACGTTACTATGTTTGTCCTA
AAAATATGAATGACGCTTATCGTACATGCCCATTTAAAAGTATCAATGCACCAGAACTTGAAAGTGAAGTGCTCGACACT
TGTAAAAAGTATTTTGAAGAACAATCGTTTCATAAACGATTGAATAACACAATACTCAAAGTCCTAAAACAGCAACAAAT
GAAGCATAAAGAAACCCATCTAACACAAGAACAACTTATCGAAAAGCTAGCTCAAAATCGTATTGATGTAAAAACGTTCA
AACGTTTATCTGCTAGTTGTAAAAGTGAAGAGAATTACTCTACTTATTCAACCTACCAAATCGATGACAAATTAAAATAT
GTCATAAAAAATAAAATAACTTTACAGGATATAGCACCTTTTATCGATTGCATCAAAATAACTCAAACTAAACAATTACA
AGGAATCTACTTTAAAAACAGTCCACTCAATATCGTTGAACAATCACATTTAATAACTCCTGAAAGGAATGAAGTAATAT
GA

Domains

Predicted by InterProScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(168-248)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

54.628

97.792

0.534
  ccrA Staphylococcus aureus N315

50.564

97.792

0.494