Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | MYO_RS11185 | Genome accession | NC_020286 |
| Coordinates | 2389998..2390672 (+) | Length | 224 a.a. |
| NCBI ID | WP_010873338.1 | Uniprot ID | - |
| Organism | Synechocystis sp. PCC 6803 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2384998..2395672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MYO_RS19735 | - | 2386136..2386300 (+) | 165 | WP_158299078.1 | hypothetical protein | - |
| MYO_RS11165 (MYO_121620) | - | 2386331..2386750 (-) | 420 | WP_010873334.1 | hypothetical protein | - |
| MYO_RS11170 (MYO_121630) | - | 2386750..2387169 (-) | 420 | WP_010873335.1 | hypothetical protein | - |
| MYO_RS11175 (MYO_121640) | - | 2387518..2388723 (+) | 1206 | WP_041425833.1 | SGNH/GDSL hydrolase family protein | - |
| MYO_RS11180 (MYO_121650) | - | 2388816..2389976 (+) | 1161 | WP_010873337.1 | cysteine desulfurase family protein | - |
| MYO_RS11185 (MYO_121660) | comF | 2389998..2390672 (+) | 675 | WP_010873338.1 | ComF family protein | Machinery gene |
| MYO_RS11190 (MYO_121670) | - | 2390762..2391376 (+) | 615 | WP_010873339.1 | L,D-transpeptidase | - |
| MYO_RS11195 (MYO_121680) | - | 2391501..2391821 (+) | 321 | WP_010873340.1 | DUF433 domain-containing protein | - |
| MYO_RS11200 (MYO_121690) | - | 2391805..2392140 (+) | 336 | WP_010873341.1 | DUF5615 family PIN-like protein | - |
| MYO_RS11205 (MYO_121700) | bchB | 2392372..2393898 (+) | 1527 | WP_010873342.1 | ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B | - |
| MYO_RS11210 (MYO_121710) | - | 2394030..2394710 (+) | 681 | WP_010873343.1 | TrkA family potassium uptake protein | - |
Sequence
Protein
Download Length: 224 a.a. Molecular weight: 25620.62 Da Isoelectric Point: 10.8654
>NTDB_id=56177 MYO_RS11185 WP_010873338.1 2389998..2390672(+) (comF) [Synechocystis sp. PCC 6803]
MWQSIRSLIFQTPCPLCQKPSQDQLCRDCTGQILSHRFPRKFQQWQGNFPRFVWGQYEGQLRRALTVMKFEQQPDIGIWL
GEQLAEQWLQQPQAKTKLRPQVVPIPLNARKQAQRGFNQAERIAAGFCRLTGYVLHPQALQRVKDTQALFGLSPGDRRRE
LQSALATGPGFNTRRPWLILDDIITTGTTALEARRIMEEKGAKVLGIVAIAAPSFSQPMELRQQ
MWQSIRSLIFQTPCPLCQKPSQDQLCRDCTGQILSHRFPRKFQQWQGNFPRFVWGQYEGQLRRALTVMKFEQQPDIGIWL
GEQLAEQWLQQPQAKTKLRPQVVPIPLNARKQAQRGFNQAERIAAGFCRLTGYVLHPQALQRVKDTQALFGLSPGDRRRE
LQSALATGPGFNTRRPWLILDDIITTGTTALEARRIMEEKGAKVLGIVAIAAPSFSQPMELRQQ
Nucleotide
Download Length: 675 bp
>NTDB_id=56177 MYO_RS11185 WP_010873338.1 2389998..2390672(+) (comF) [Synechocystis sp. PCC 6803]
ATGTGGCAATCAATTCGTTCCCTCATTTTTCAAACTCCCTGTCCTCTATGCCAAAAACCCAGTCAGGATCAACTTTGTCG
GGATTGCACTGGACAAATTTTGAGCCATCGTTTTCCTCGTAAATTCCAGCAATGGCAAGGAAACTTTCCCCGCTTTGTTT
GGGGACAATACGAAGGACAATTGCGGCGGGCTTTAACGGTGATGAAGTTTGAGCAACAGCCAGACATTGGCATTTGGTTG
GGGGAACAGTTGGCAGAACAGTGGTTACAACAACCCCAAGCTAAAACTAAATTGCGTCCCCAGGTGGTGCCCATTCCCCT
AAACGCTCGTAAGCAAGCCCAACGGGGATTTAATCAAGCTGAAAGAATTGCCGCTGGTTTTTGCCGCCTGACTGGTTATG
TTCTCCACCCCCAAGCATTACAACGAGTTAAAGATACCCAAGCTCTGTTTGGTCTTAGCCCAGGCGATCGCCGCCGGGAA
TTGCAATCAGCTTTAGCCACGGGGCCAGGGTTTAACACTCGCCGACCCTGGTTGATTTTGGATGATATTATTACGACCGG
CACCACCGCCCTAGAAGCCCGACGGATAATGGAAGAAAAGGGAGCTAAAGTGTTGGGTATCGTGGCGATCGCCGCACCGT
CTTTTTCCCAGCCCATGGAACTTAGACAGCAATGA
ATGTGGCAATCAATTCGTTCCCTCATTTTTCAAACTCCCTGTCCTCTATGCCAAAAACCCAGTCAGGATCAACTTTGTCG
GGATTGCACTGGACAAATTTTGAGCCATCGTTTTCCTCGTAAATTCCAGCAATGGCAAGGAAACTTTCCCCGCTTTGTTT
GGGGACAATACGAAGGACAATTGCGGCGGGCTTTAACGGTGATGAAGTTTGAGCAACAGCCAGACATTGGCATTTGGTTG
GGGGAACAGTTGGCAGAACAGTGGTTACAACAACCCCAAGCTAAAACTAAATTGCGTCCCCAGGTGGTGCCCATTCCCCT
AAACGCTCGTAAGCAAGCCCAACGGGGATTTAATCAAGCTGAAAGAATTGCCGCTGGTTTTTGCCGCCTGACTGGTTATG
TTCTCCACCCCCAAGCATTACAACGAGTTAAAGATACCCAAGCTCTGTTTGGTCTTAGCCCAGGCGATCGCCGCCGGGAA
TTGCAATCAGCTTTAGCCACGGGGCCAGGGTTTAACACTCGCCGACCCTGGTTGATTTTGGATGATATTATTACGACCGG
CACCACCGCCCTAGAAGCCCGACGGATAATGGAAGAAAAGGGAGCTAAAGTGTTGGGTATCGTGGCGATCGCCGCACCGT
CTTTTTCCCAGCCCATGGAACTTAGACAGCAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Synechocystis sp. PCC 6803 |
100 |
100 |
1 |