Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LVJ79_RS02100 Genome accession   NZ_CP091518
Coordinates   377723..379762 (-) Length   679 a.a.
NCBI ID   WP_003785160.1    Uniprot ID   F5S4I2
Organism   Kingella kingae strain 4177/66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 372723..384762
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ79_RS02075 (LVJ79_02075) - 373220..373798 (+) 579 WP_003785150.1 biliverdin-producing heme oxygenase -
  LVJ79_RS10620 - 373864..373992 (-) 129 WP_003785152.1 hypothetical protein -
  LVJ79_RS02080 (LVJ79_02080) - 374072..374905 (-) 834 Protein_387 adenosine deaminase family protein -
  LVJ79_RS02085 (LVJ79_02085) - 375300..376043 (+) 744 WP_003785156.1 IS110 family transposase -
  LVJ79_RS10755 - 376146..376457 (+) 312 WP_032827573.1 transposase -
  LVJ79_RS02095 (LVJ79_02095) - 376827..377636 (-) 810 WP_003785159.1 hypothetical protein -
  LVJ79_RS02100 (LVJ79_02100) uvrB 377723..379762 (-) 2040 WP_003785160.1 excinuclease ABC subunit UvrB Machinery gene
  LVJ79_RS02105 (LVJ79_02105) - 379903..380145 (+) 243 WP_003785161.1 antitoxin -
  LVJ79_RS02110 (LVJ79_02110) - 380142..380549 (+) 408 WP_003785163.1 type II toxin-antitoxin system VapC family toxin -
  LVJ79_RS02115 (LVJ79_02115) tpx 380609..381106 (-) 498 WP_003785166.1 thiol peroxidase -
  LVJ79_RS02120 (LVJ79_02120) - 381200..381700 (-) 501 WP_003785168.1 hypothetical protein -
  LVJ79_RS02125 (LVJ79_02125) - 381791..382969 (-) 1179 WP_003785170.1 phosphoglycerate kinase -
  LVJ79_RS02130 (LVJ79_02130) pdxH 383049..383681 (-) 633 WP_003791386.1 pyridoxamine 5'-phosphate oxidase -

Sequence

Protein


Download         Length: 679 a.a.        Molecular weight: 77130.74 Da        Isoelectric Point: 5.2563

>NTDB_id=561748 LVJ79_RS02100 WP_003785160.1 377723..379762(-) (uvrB) [Kingella kingae strain 4177/66]
MQIIQFPNSPFKLHQPFPPAGDQPTAIAGLLDGLADGLSSQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRNDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDQIDQRDIIATLVSMQYERGDVDFKRGSFRVRGDVVDVYPAESSDYALRISLFDDEIDRLSLFDPLSGSL
HQRVGRYTIFPSSHYVTPRDTVLRACESIKEELRQRIEFYTNENRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPKNAILFIDESHVTIGQIGAMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFERAMPQTVFVSA
TPAAYEAEHAGQIVEQVVRPTGLLDPEIIIRPVGTQVDDLLSEINIRKEKGERVLVTTLTKRMAEQLTDYYTELGVKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKSAIDETERRREKQMKFNEEHGIVPQQINKKVKDLIDGVYNAETEVLGSLKTKSSKKKASKTEIRTEQDAIDEI
TRLEKQMQQAARDLQFEEAAVLRDKIRVIKESLLFGVTN

Nucleotide


Download         Length: 2040 bp        

>NTDB_id=561748 LVJ79_RS02100 WP_003785160.1 377723..379762(-) (uvrB) [Kingella kingae strain 4177/66]
ATGCAAATTATCCAATTCCCAAATTCCCCCTTCAAACTCCACCAACCCTTTCCCCCAGCAGGCGACCAACCCACCGCCAT
TGCAGGTTTACTAGACGGATTAGCGGACGGCTTGTCTAGCCAAACCCTACTCGGCGTAACAGGTTCAGGCAAAACCTACA
CCATGGCAAACGTCATCGCCCAAAGCGGTCGCCCAGCCATCATCATGGCACACAACAAAACCCTAGCCGCCCAACTCTAC
GCCGAAATGCGCGAATTTTTCCCCGAAAACGCCGTAGAATATTTCGTGTCCTACTACGACTACTACCAACCCGAAGCCTA
CGTCCCCAGCCGCGACCTATTCATTGAAAAAGACAGCGCAATCAACGAACACATTGAACAAATGCGCCTGTCCGCCACCA
AAAACCTGATGACGCGCAATGACGTAATTATTGTCGCCACTGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAATAT
CAACAAATGGTTTTATCGGTCAAAGAAGGCGACCAAATCGACCAACGTGACATCATCGCCACACTCGTGTCCATGCAATA
CGAACGCGGCGACGTGGATTTCAAACGCGGCTCGTTTCGCGTGCGTGGCGACGTGGTGGACGTGTACCCAGCCGAAAGCT
CGGATTACGCGCTGCGAATTTCGCTGTTTGACGATGAAATTGACCGCCTATCGCTGTTTGACCCACTTTCAGGCAGCCTG
CACCAACGTGTCGGGCGATACACCATTTTCCCCAGCAGCCACTACGTTACCCCACGCGACACCGTGTTACGCGCTTGCGA
ATCCATTAAAGAAGAACTGCGCCAACGCATTGAATTTTATACAAATGAAAACCGCCCAGTAGAACAACAACGCATTGAAC
AACGCACACGATTTGATTTAGAAATGCTGTATGAAATGGGTTTTTGCAAAGGGATTGAGAATTACAGCCGCCACTTTTCG
GGCAAAAAAGAGGGCGAACCACCGCCAACTTTAATGGATTATTTGCCGAAAAACGCGATTTTATTCATTGACGAAAGCCA
CGTTACCATTGGGCAAATTGGCGCGATGTACAAAGGCGATGCCAGCCGCAAGCAAAATTTGGTTGATTACGGTTTCAGGC
TGCCGTCCGCGCGTGATAATCGTCCGCTCAAATTCCACGAATTTGAACGCGCCATGCCGCAAACCGTGTTTGTGTCCGCC
ACGCCAGCCGCCTACGAAGCCGAACACGCAGGGCAAATTGTGGAACAAGTCGTGCGCCCGACTGGTTTGCTTGACCCTGA
AATCATTATCCGCCCAGTTGGTACGCAAGTTGATGATTTATTGAGTGAAATCAATATACGCAAAGAAAAAGGCGAGCGCG
TGTTGGTAACAACCCTAACCAAACGCATGGCGGAGCAACTGACTGATTACTATACAGAATTAGGCGTAAAAGTCCGCTAT
TTGCATAGCGATATTGACACGGTGGAGCGCGTGGAAATTATCCGCGATTTGCGTTTGGGGCTGTTTGATGTGTTGGTGGG
GATTAACCTGTTGCGCGAGGGCTTGGATATTCCCGAAGTGTCGCTTGTCGCCATTTTGGACGCGGACAAAGAGGGCTTTT
TACGCTCGCACCGCAGCCTAATCCAAACCATCGGACGCGCCGCCCGAAACGTGAACGGTGTGGCGATTTTGTACGCCGAC
AAAATCACCGACAGCATGAAATCCGCGATTGACGAAACCGAACGCCGCCGCGAAAAACAGATGAAATTCAACGAAGAACA
TGGCATTGTGCCGCAGCAAATCAATAAGAAAGTGAAAGATTTGATTGATGGTGTTTACAATGCAGAAACCGAAGTTTTAG
GCAGCCTGAAAACGAAATCGAGCAAGAAAAAAGCATCGAAAACCGAAATCCGCACGGAACAGGACGCGATTGATGAAATT
ACGCGGTTGGAGAAACAGATGCAGCAAGCGGCTAGGGATTTGCAGTTTGAAGAAGCGGCTGTGTTGCGCGATAAAATTAG
AGTGATTAAGGAGAGTTTGTTGTTTGGAGTAACAAATTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(23-144)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB/uvrC motif (UVR)

(639-671)

UvrB interaction domain (UvrB_inter)

(165-255)

Helicase conserved C-terminal domain (Helicase_C)

(441-549)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5S4I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.075

98.675

0.543
  uvrB Streptococcus pneumoniae R6

54.925

98.675

0.542
  uvrB Streptococcus pneumoniae D39

54.925

98.675

0.542